DMR 36521 chr1:2188851-2189000 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2188851-2189000 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SKI (0bp away) |
| ANODEV p-value | 0.00226900970445 |
| Frequencies | Benign: 3.0 (42.86%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36521 | SKI | 98 | uc001aja.4 | chr1 | 2160134 | 2241652 | + | 150 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36521 | chr1 | 2188581 | 2189095 | wgEncodeRegDnaseClusteredV2 | 31 | score:1000, srow:1375 |
| 36521 | chr1 | 2188769 | 2188952 | wgEncodeRegTfbsClusteredV3 | CTCF | score:123, expCount:1, expNums:635, expScores:123, srow:6974 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36521 | cellmeth_recounts | PrEC: 13, LNCaP: 23, DU145: 3 |  |
| 36521 | cellmeth_diffreps_PrECvsDU145 | A=22, B=3, Length=220, Event=Down, log2FC=-2.87, padj=0.00204221817904448 |  |
| 36521 | cellexp | id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843 |  |
| 36521 | tcgameth | site:cg05937603, B=0.8, L=0.85, H=0.85 |  |
| 36521 | tcgaexp | gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668 |  |
| 36521 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36521 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |