DMR 36523 chr1:2204151-2204600 (450bp)
| DMR Stats | |
|---|---|
| Position | chr1:2204151-2204600 (View on UCSC) |
| Width | 450bp |
| Genomic Context | intron |
| Nearest Genes | SKI (0bp away) |
| ANODEV p-value | 0.000333873201945 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36523 | SKI | 98 | uc001aja.4 | chr1 | 2160134 | 2241652 | + | 450 | 100.0 | 0.37 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36523 | chr1 | 2204161 | 2204615 | wgEncodeRegDnaseClusteredV2 | 14 | score:297, srow:1388 |
| 36523 | chr1 | 2203769 | 2204172 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:166, expCount:1, expNums:247, expScores:166, srow:7001 |
| 36523 | chr1 | 2204244 | 2204401 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:470, expCount:1, expNums:216, expScores:470, srow:7002 |
| 36523 | chr1 | 2204378 | 2204391 | phastConsElements100way | lod=20 | score:290, srow:9910 |
| 36523 | chr1 | 2204437 | 2204454 | phastConsElements100way | lod=30 | score:330, srow:9911 |
| 36523 | chr1 | 2204472 | 2204480 | phastConsElements100way | lod=19 | score:285, srow:9912 |
| 36523 | chr1 | 2204498 | 2204506 | phastConsElements100way | lod=22 | score:300, srow:9913 |
| 36523 | chr1 | 2204538 | 2204546 | phastConsElements100way | lod=34 | score:343, srow:9914 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36523 | cellmeth_recounts | PrEC: 18, LNCaP: 9, DU145: 9 |  |
| 36523 | cellmeth_diffreps_PrECvsDU145 | A=18, B=1, Length=200, Event=Down, log2FC=-4.17, padj=0.000790397688779211 |  |
| 36523 | cellexp | id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843 |  |
| 36523 | tcgaexp | gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668 |  |
| 36523 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36523 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36523 | pubmed | gene=SKI, G=2853, GP=19, GC=613, GM=9, GPM=0, GCM=3 |  |