DMR 36525 chr1:2225201-2225350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2225201-2225350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SKI (0bp away) |
| ANODEV p-value | 0.0049337229685 |
| Frequencies | Benign: 5.0 (71.43%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36525 | SKI | 98 | uc001aja.4 | chr1 | 2160134 | 2241652 | + | 150 | 100.0 | 0.84 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36525 | chr1 | 2224570 | 2226569 | cpgShelf | — | values(x.gr)[overs$srow, ]:171 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36525 | cellmeth_recounts | PrEC: 29, LNCaP: 16, DU145: 0 |  |
| 36525 | cellmeth_diffreps_PrECvsLNCaP | A=339, B=29, Length=1260, Event=Down, log2FC=-3.55, padj=0 |  |
| 36525 | cellmeth_diffreps_PrECvsDU145 | A=370, B=17, Length=1660, Event=Down, log2FC=-4.44, padj=0 |  |
| 36525 | cellmeth_diffreps_LNCaPvsDU145 | A=16.04, B=0, Length=340, Event=Down, log2FC=-Inf, padj=0.000429069423162017 |  |
| 36525 | cellexp | id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843 |  |
| 36525 | tcgaexp | gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668 |  |
| 36525 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36525 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |