DMR 36526 chr1:2245501-2245650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2245501-2245650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intergenic |
| Nearest Genes | SKI (3848bp away) |
| ANODEV p-value | 0.000556694431917 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36526 | chr1 | 2245186 | 2245735 | wgEncodeRegDnaseClusteredV2 | 29 | score:644, srow:1443 |
| 36526 | chr1 | 2245628 | 2246171 | wgEncodeRegTfbsClusteredV3 | NFIC | score:254, expCount:1, expNums:187, expScores:254, srow:7157 |
| 36526 | chr1 | 2245638 | 2246237 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:127, expCount:1, expNums:348, expScores:127, srow:7158 |
| 36526 | chr1 | 2245642 | 2246045 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:155, expCount:1, expNums:247, expScores:155, srow:7159 |
| 36526 | chr1 | 2243715 | 2245714 | cpgShore | — | values(x.gr)[overs$srow, ]:289 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36526 | cellmeth_recounts | PrEC: 10, LNCaP: 33, DU145: 1 |  |
| 36526 | cellmeth_diffreps_PrECvsLNCaP | A=46, B=138, Length=680, Event=Up, log2FC=1.58, padj=3.56268043632214e-10 |  |
| 36526 | cellmeth_diffreps_PrECvsDU145 | A=52, B=2, Length=540, Event=Down, log2FC=-4.7, padj=4.29802078830121e-12 |  |
| 36526 | cellmeth_diffreps_LNCaPvsDU145 | A=159.29, B=1.87, Length=880, Event=Down, log2FC=-6.41, padj=0 |  |
| 36526 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36526 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |