DMR 36528 chr1:2330451-2330600 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:2330451-2330600 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | RER1 (0bp away) |
| ANODEV p-value | 0.00807208516372 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36528 | RER1 | 102 | uc001aje.2 | chr1 | 2323214 | 2336885 | + | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 36528 | RER1 | 102 | uc001ajf.2 | chr1 | 2323214 | 2336885 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36528 | chr1 | 2329551 | 2331550 | cpgShelf | — | values(x.gr)[overs$srow, ]:184 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36528 | cellmeth_recounts | PrEC: 2, LNCaP: 1, DU145: 0 |  |
| 36528 | cellexp | id=ENSG00000157916, name=RER1, PrEC=7919, str=14474, LNCaP=8139, str=9586, DU145=5631, str=6446 |  |
| 36528 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36528 | tcgaexp | gene=RER1, entrez=11079, pos=chr1:2323214-2336885(+), B=8602, L=9269, M=9262, H=8727 |  |
| 36528 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |