DMR 36532 chr1:2473601-2473750 (150bp)

DMR Stats
Positionchr1:2473601-2473750 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesLOC115110 (7608bp away)
ANODEV p-value0.00594904914583
FrequenciesBenign: 3.0 (42.86%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36532 chr1 2473466 2473735 wgEncodeRegDnaseClusteredV2 2 score:228, srow:1693
36532 chr1 2473041 2473936 wgEncodeRegTfbsClusteredV3 POLR2A score:322, expCount:3, expNums:32,524,622, expScores:322,218,198, srow:7830
36532 chr1 2473051 2473674 wgEncodeRegTfbsClusteredV3 PHF8 score:425, expCount:1, expNums:30, expScores:425, srow:7833
36532 chr1 2473079 2473775 wgEncodeRegTfbsClusteredV3 HMGN3 score:167, expCount:1, expNums:501, expScores:132, srow:7838
36532 chr1 2473084 2473679 wgEncodeRegTfbsClusteredV3 ZNF263 score:273, expCount:1, expNums:368, expScores:273, srow:7839
36532 chr1 2473220 2473775 wgEncodeRegTfbsClusteredV3 HDAC8 score:195, expCount:1, expNums:592, expScores:195, srow:7844
36532 chr1 2473229 2473752 wgEncodeRegTfbsClusteredV3 HDAC1 score:231, expCount:1, expNums:26, expScores:231, srow:7845
36532 chr1 2473238 2473677 wgEncodeRegTfbsClusteredV3 CBX3 score:287, expCount:1, expNums:211, expScores:287, srow:7846
36532 chr1 2473269 2473618 wgEncodeRegTfbsClusteredV3 HDAC2 score:356, expCount:1, expNums:27, expScores:356, srow:7847
36532 chr1 2473274 2473629 wgEncodeRegTfbsClusteredV3 RCOR1 score:393, expCount:2, expNums:491,492, expScores:351,393, srow:7848
36532 chr1 2472587 2474586 cpgShore — values(x.gr)[overs$srow, ]:343
  • 11 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36532 cellmeth_recounts PrEC: 23, LNCaP: 19, DU145: 3
36532 cellmeth_diffreps_PrECvsDU145 A=39, B=2, Length=440, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08
36532 cellmeth_diffreps_LNCaPvsDU145 A=38.49, B=1.87, Length=540, Event=Down, log2FC=-4.36, padj=5.78719153157393e-08
36532 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36532 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305