DMR 36533 chr1:2520251-2520400 (150bp)

DMR Stats
Positionchr1:2520251-2520400 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesFAM213B (0bp away)
ANODEV p-value0.0048688172153
FrequenciesBenign: 5.0 (71.43%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36533 FAM213B 111 uc001aju.3 chr1 2518189 2522908 + 150 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (73.33), E6 (26.67), I6 (0), E7 (0) 0.0
36533 FAM213B 111 uc001ajv.2 chr1 2518189 2522908 + 150 100.0 0.72 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (73.33), E6 (26.67), I6 (0), E7 (0) 0.0
36533 FAM213B 111 uc001ajw.2 chr1 2518189 2522908 + 150 100.0 0.08 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (94.67), E6 (5.33), I6 (0), E7 (0) 0.0
36533 FAM213B 111 uc001ajx.2 chr1 2518517 2522908 + 150 100.0 0.08 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (94.67), E5 (5.33), I5 (0), E6 (0) 0.0
36533 FAM213B 111 uc010nzd.2 chr1 2518189 2522908 + 150 100.0 0.64 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (94.67), E6 (5.33), I6 (0), E7 (0) 0.0
36533 FAM213B 111 uc010nze.2 chr1 2518189 2522908 + 150 100.0 0.64 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (94.67), E5 (5.33), I5 (0), E6 (0) 0.0
36533 FAM213B 111 uc010nzf.2 chr1 2518189 2522908 + 150 100.0 0.64 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (96.67), E5 (3.33), I5 (0), E6 (0) 0.0
36533 FAM213B 111 uc021oew.1 chr1 2517899 2522908 + 150 100.0 0.64 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (94.67), E6 (5.33), I6 (0), E7 (0) 0.0
36533 FAM213B 111 uc021oex.1 chr1 2517899 2522908 + 150 100.0 0.49 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (73.33), E6 (26.67), I6 (0), E7 (0) 0.0
  • 9 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36533 chr1 2520166 2520695 wgEncodeRegDnaseClusteredV2 6 score:356, srow:1748
36533 chr1 2520154 2520749 wgEncodeRegTfbsClusteredV3 ZNF263 score:259, expCount:1, expNums:368, expScores:259, srow:8347
36533 chr1 2520353 2520368 tfbsConsSites V$TAL1BETAITF2_01 score:846, zScore:1.73, srow:4371
36533 chr1 2520382 2520382 cosmic COSM40320 srow:1960
36533 chr1 2520383 2520383 cosmic COSM1341236 srow:1961
36533 chr1 2520386 2520386 cosmic COSM907454 srow:1962
36533 chr1 2520399 2520399 cosmic COSM178376 srow:1963
36533 chr1 2520338 2520340 phastConsElements100way lod=18 score:280, srow:11424
36533 chr1 2520359 2520367 phastConsElements100way lod=70 score:414, srow:11425
36533 chr1 2520372 2520379 phastConsElements100way lod=35 score:345, srow:11426
36533 chr1 2520381 2520385 phastConsElements100way lod=33 score:340, srow:11427
36533 chr1 2520390 2520397 phastConsElements100way lod=59 score:397, srow:11428
36533 chr1 2520399 2520400 phastConsElements100way lod=17 score:274, srow:11429
36533 chr1 2518893 2520892 cpgShore — values(x.gr)[overs$srow, ]:347
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36533 cellmeth_recounts PrEC: 33, LNCaP: 19, DU145: 4
36533 cellmeth_diffreps_PrECvsLNCaP A=58, B=19, Length=300, Event=Down, log2FC=-1.61, padj=0.000235448342019214
36533 cellmeth_diffreps_PrECvsDU145 A=58, B=6, Length=460, Event=Down, log2FC=-3.27, padj=3.36978979971677e-10
36533 cellexp id=ENSG00000157870, name=FAM213B, PrEC=3023, str=1367, LNCaP=3832, str=3142, DU145=1558, str=1253
36533 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36533 tcgaexp gene=FAM213B, entrez=127281, pos=chr1:2517899-2522908(+), B=2251, L=2968, M=2657, H=2580
36533 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305