DMR Stats
Positionchr1:3372801-3372950 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesARHGEF16 (0bp away)
ANODEV p-value0.00446576180506
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36536 ARHGEF16 119 uc001akg.4 chr1 3371147 3397677 + 150 100.0 0.55 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36536 chr1 3372947 3372949 phastConsElements100way lod=15 score:262, srow:14630
36536 chr1 3371684 3373683 cpgShore values(x.gr)[overs$srow, ]:435
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36536 cellmeth_recounts PrEC: 27, LNCaP: 52, DU145: 0
36536 cellmeth_diffreps_PrECvsDU145 A=41, B=1, Length=400, Event=Down, log2FC=-5.36, padj=3.57052378930794e-10
36536 cellmeth_diffreps_LNCaPvsDU145 A=43.83, B=0.94, Length=400, Event=Down, log2FC=-5.55, padj=1.44157555732346e-10
36536 cellexp id=ENSG00000130762, name=ARHGEF16, PrEC=3130, str=1285, LNCaP=3511, str=2273, DU145=1024, str=980
36536 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36536 tcgaexp gene=ARHGEF16, entrez=27237, pos=chr1:3371147-3397677(+), B=1283, L=1644, M=1577, H=1514
36536 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305