DMR Stats | |
---|---|
Position | chr1:3372801-3372950 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | ARHGEF16 (0bp away) |
ANODEV p-value | 0.00446576180506 |
Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36536 | ARHGEF16 | 119 | uc001akg.4 | chr1 | 3371147 | 3397677 | + | 150 | 100.0 | 0.55 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36536 | chr1 | 3372947 | 3372949 | phastConsElements100way | lod=15 | score:262, srow:14630 |
36536 | chr1 | 3371684 | 3373683 | cpgShore | — | values(x.gr)[overs$srow, ]:435 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36536 | cellmeth_recounts | PrEC: 27, LNCaP: 52, DU145: 0 | |
36536 | cellmeth_diffreps_PrECvsDU145 | A=41, B=1, Length=400, Event=Down, log2FC=-5.36, padj=3.57052378930794e-10 | |
36536 | cellmeth_diffreps_LNCaPvsDU145 | A=43.83, B=0.94, Length=400, Event=Down, log2FC=-5.55, padj=1.44157555732346e-10 | |
36536 | cellexp | id=ENSG00000130762, name=ARHGEF16, PrEC=3130, str=1285, LNCaP=3511, str=2273, DU145=1024, str=980 | |
36536 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36536 | tcgaexp | gene=ARHGEF16, entrez=27237, pos=chr1:3371147-3397677(+), B=1283, L=1644, M=1577, H=1514 | |
36536 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |