DMR 36537 chr1:3378601-3378750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3378601-3378750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | ARHGEF16 (0bp away) |
| ANODEV p-value | 0.00840004470887 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36537 | ARHGEF16 | 119 | uc001akg.4 | chr1 | 3371147 | 3397677 | + | 150 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36537 | chr1 | 3378606 | 3378775 | wgEncodeRegDnaseClusteredV2 | 3 | score:330, srow:2616 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36537 | cellmeth_recounts | PrEC: 12, LNCaP: 11, DU145: 3 |  |
| 36537 | cellmeth_diffreps_PrECvsDU145 | A=211, B=11, Length=1080, Event=Down, log2FC=-4.26, padj=0 |  |
| 36537 | cellexp | id=ENSG00000130762, name=ARHGEF16, PrEC=3130, str=1285, LNCaP=3511, str=2273, DU145=1024, str=980 |  |
| 36537 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36537 | tcgaexp | gene=ARHGEF16, entrez=27237, pos=chr1:3371147-3397677(+), B=1283, L=1644, M=1577, H=1514 |  |
| 36537 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |