DMR 36538 chr1:3384851-3385000 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3384851-3385000 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | ARHGEF16 (0bp away) |
| ANODEV p-value | 0.00525378949742 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36538 | ARHGEF16 | 119 | uc001akg.4 | chr1 | 3371147 | 3397677 | + | 150 | 100.0 | 0.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 36538 | ARHGEF16 | 119 | uc001aki.3 | chr1 | 3382569 | 3397677 | + | 150 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 36538 | ARHGEF16 | 119 | uc001akj.3 | chr1 | 3383535 | 3397677 | + | 150 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36538 | chr1 | 3384866 | 3385315 | wgEncodeRegDnaseClusteredV2 | 22 | score:1000, srow:2628 |
| 36538 | chr1 | 3384883 | 3385172 | wgEncodeRegTfbsClusteredV3 | THAP1 | score:151, expCount:1, expNums:241, expScores:151, srow:9346 |
| 36538 | chr1 | 3384893 | 3385172 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:148, expCount:2, expNums:567,568, expScores:147,148, srow:9347 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36538 | cellmeth_recounts | PrEC: 8, LNCaP: 13, DU145: 0 |  |
| 36538 | cellmeth_diffreps_PrECvsDU145 | A=18, B=0, Length=340, Event=Down, log2FC=-Inf, padj=3.84450226825195e-05 |  |
| 36538 | cellexp | id=ENSG00000130762, name=ARHGEF16, PrEC=3130, str=1285, LNCaP=3511, str=2273, DU145=1024, str=980 |  |
| 36538 | tcgameth | site:cg24371534, B=0.88, L=0.96, H=0.96 |  |
| 36538 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36538 | tcgaexp | gene=ARHGEF16, entrez=27237, pos=chr1:3371147-3397677(+), B=1283, L=1644, M=1577, H=1514 |  |
| 36538 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |