DMR 36539 chr1:3388401-3388550 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3388401-3388550 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | ARHGEF16 (0bp away) |
| ANODEV p-value | 0.000321763045283 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36539 | ARHGEF16 | 119 | uc001akg.4 | chr1 | 3371147 | 3397677 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 36539 | ARHGEF16 | 119 | uc001aki.3 | chr1 | 3382569 | 3397677 | + | 150 | 100.0 | 0.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 36539 | ARHGEF16 | 119 | uc001akj.3 | chr1 | 3383535 | 3397677 | + | 150 | 100.0 | 0.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36539 | ARHGEF16 | 119 | uc009vli.1 | chr1 | 3388171 | 3391021 | + | 150 | 100.0 | 0.44 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 36539 | ARHGEF16 | 119 | uc010nzh.2 | chr1 | 3388171 | 3397677 | + | 150 | 100.0 | 0.19 | 0 | 100.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36539 | chr1 | 3387726 | 3388655 | wgEncodeRegDnaseClusteredV2 | 95 | score:1000, srow:2633 |
| 36539 | chr1 | 3387331 | 3388500 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:572, expCount:5, expNums:191,192,445,446,616, expScores:572,251,90,267,344, srow:9348 |
| 36539 | chr1 | 3387961 | 3388630 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:320, expCount:1, expNums:8, expScores:320, srow:9357 |
| 36539 | chr1 | 3387971 | 3388514 | wgEncodeRegTfbsClusteredV3 | NFIC | score:207, expCount:1, expNums:187, expScores:207, srow:9358 |
| 36539 | chr1 | 3387989 | 3388604 | wgEncodeRegTfbsClusteredV3 | MYBL2 | score:406, expCount:1, expNums:186, expScores:406, srow:9360 |
| 36539 | chr1 | 3388047 | 3388422 | wgEncodeRegTfbsClusteredV3 | YY1 | score:158, expCount:1, expNums:203, expScores:158, srow:9366 |
| 36539 | chr1 | 3388113 | 3388502 | wgEncodeRegTfbsClusteredV3 | MAZ | score:141, expCount:1, expNums:440, expScores:141, srow:9373 |
| 36539 | chr1 | 3388219 | 3388674 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:138, expCount:1, expNums:195, expScores:138, srow:9374 |
| 36539 | chr1 | 3388223 | 3389020 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:323, expCount:1, expNums:368, expScores:270, srow:9375 |
| 36539 | chr1 | 3388279 | 3388678 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:301, expCount:1, expNums:441, expScores:301, srow:9376 |
| 36539 | chr1 | 3388291 | 3388666 | wgEncodeRegTfbsClusteredV3 | TBP | score:142, expCount:1, expNums:359, expScores:142, srow:9377 |
| 36539 | chr1 | 3388306 | 3388787 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:83, expNums:0,5,9,12,16,18,20,24,35,37,39,42,44,49,137,174,213,262,463,493,595,597,598,601,603,604,605,606,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,650,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:192,427,156,532,570,554,197,442,168,390,317,168,511,186,357,709,243,102,558,456,1000,1000,1000,111,187,372,223,116,374,384,354,280,742,1000,1000,1000,1000,1000,1000,869,225,888,473,471,809,618,290,306,881,475,115,431,482,1000,320,514,1000,146,376,378,249,530,388,386,478,254,890,555,551,578,377,482,280,417,105,420,358,160,444,783,380,848,135, srow:9378 |
| 36539 | chr1 | 3388380 | 3388689 | wgEncodeRegTfbsClusteredV3 | MYC | score:321, expCount:1, expNums:626, expScores:321, srow:9379 |
| 36539 | chr1 | 3388395 | 3388702 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:1000, expCount:2, expNums:138,216, expScores:379,1000, srow:9380 |
| 36539 | chr1 | 3388400 | 3388655 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:7, expNums:149,193,231,264,355,448,466, expScores:730,1000,128,523,302,567,254, srow:9381 |
| 36539 | chr1 | 3388401 | 3388670 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:305, expCount:1, expNums:450, expScores:305, srow:9382 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36539 | cellmeth_recounts | PrEC: 1, LNCaP: 10, DU145: 5 |  |
| 36539 | cellexp | id=ENSG00000130762, name=ARHGEF16, PrEC=3130, str=1285, LNCaP=3511, str=2273, DU145=1024, str=980 |  |
| 36539 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36539 | tcgaexp | gene=ARHGEF16, entrez=27237, pos=chr1:3371147-3397677(+), B=1283, L=1644, M=1577, H=1514 |  |
| 36539 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36539 | pubmed | gene=ARHGEF16, G=7, GP=0, GC=6, GM=2, GPM=0, GCM=2 |  |