DMR 36545 chr1:3662551-3662800 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:3662551-3662800 (View on UCSC) |
| Width | 250bp |
| Genomic Context | exon |
| Nearest Genes | TP73-AS1 (0bp away) |
| ANODEV p-value | 0.00455633584401 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36545 | TP73-AS1 | 125 | uc001akt.4 | chr1 | 3652548 | 3663335 | - | 250 | 100.0 | 0.35 | 1 | 0.0 | E1 (0), I1 (22.4), E2 (78), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 36545 | TP73-AS1 | 125 | uc009vlm.3 | chr1 | 3652548 | 3663937 | - | 250 | 100.0 | 0.26 | 1 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 36545 | TP73-AS1 | 125 | uc021ofj.1 | chr1 | 3652548 | 3663937 | - | 250 | 100.0 | 0.6 | 1 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36545 | TP73-AS1 | 125 | uc021ofk.1 | chr1 | 3652548 | 3663937 | - | 250 | 100.0 | 0.35 | 1 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36545 | TP73-AS1 | 125 | uc021ofl.1 | chr1 | 3652548 | 3663937 | - | 250 | 100.0 | 0.86 | 1 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36545 | chr1 | 3662426 | 3663755 | wgEncodeRegDnaseClusteredV2 | 37 | score:920, srow:2949 |
| 36545 | chr1 | 3662175 | 3662680 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:623, expCount:1, expNums:368, expScores:446, srow:10389 |
| 36545 | chr1 | 3662712 | 3663285 | wgEncodeRegTfbsClusteredV3 | MYC | score:143, expCount:2, expNums:347,487, expScores:132,143, srow:10390 |
| 36545 | chr1 | 3662722 | 3662997 | wgEncodeRegTfbsClusteredV3 | TAL1 | score:149, expCount:1, expNums:542, expScores:149, srow:10391 |
| 36545 | chr1 | 3662731 | 3663034 | wgEncodeRegTfbsClusteredV3 | GATA2 | score:124, expCount:1, expNums:498, expScores:124, srow:10392 |
| 36545 | chr1 | 3662574 | 3662583 | phastConsElements100way | lod=16 | score:268, srow:16203 |
| 36545 | chr1 | 3662612 | 3662615 | phastConsElements100way | lod=13 | score:247, srow:16204 |
| 36545 | chr1 | 3662631 | 3662632 | phastConsElements100way | lod=13 | score:247, srow:16205 |
| 36545 | chr1 | 3662733 | 3662746 | phastConsElements100way | lod=27 | score:320, srow:16206 |
| 36545 | chr1 | 3660964 | 3662963 | cpgShore | — | values(x.gr)[overs$srow, ]:470 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36545 | cellmeth_recounts | PrEC: 14, LNCaP: 20, DU145: 9 |  |
| 36545 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=13, Length=220, Event=Up, log2FC=Inf, padj=0.000827318446465587 |  |
| 36545 | cellmeth_diffreps_PrECvsDU145 | A=21, B=4, Length=300, Event=Down, log2FC=-2.39, padj=0.0122007480619552 |  |
| 36545 | cellmeth_diffreps_LNCaPvsDU145 | A=17.1, B=0.94, Length=280, Event=Down, log2FC=-4.19, padj=0.00311648242974852 |  |
| 36545 | cellexp | id=ENSG00000227372, name=TP73-AS1, PrEC=1358, str=864, LNCaP=2542, str=2300, DU145=1750, str=1568 |  |
| 36545 | tcgameth | site:cg00397104, B=0.84, L=0.88, H=0.86 |  |
| 36545 | tcgameth | site:cg14037182, B=0.46, L=0.56, H=0.54 |  |
| 36545 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36545 | tcgaexp | gene=TP73-AS1, entrez=57212, pos=chr1:3652548-3663937(-), B=1526, L=1501, M=1442, H=1483 |  |
| 36545 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |