DMR 36552 chr1:6054301-6054450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:6054301-6054450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | KCNAB2 (0bp away) |
| ANODEV p-value | 0.0108096967213 |
| Frequencies | Benign: 2.0 (28.57%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36552 | KCNAB2 | 141 | uc009vlv.2 | chr1 | 6052358 | 6161253 | + | 150 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36552 | chr1 | 6054201 | 6054475 | wgEncodeRegDnaseClusteredV2 | 17 | score:582, srow:4551 |
| 36552 | chr1 | 6054328 | 6054341 | tfbsConsSites | V$RREB1_01 | score:815, zScore:1.79, srow:9016 |
| 36552 | chr1 | 6054332 | 6054340 | tfbsConsSites | V$PAX2_02 | score:1000, zScore:2.35, srow:9017 |
| 36552 | chr1 | 6054328 | 6054332 | phastConsElements100way | lod=16 | score:268, srow:20551 |
| 36552 | chr1 | 6054384 | 6054386 | phastConsElements100way | lod=18 | score:280, srow:20552 |
| 36552 | chr1 | 6054399 | 6054406 | phastConsElements100way | lod=28 | score:323, srow:20553 |
| 36552 | chr1 | 6052956 | 6054955 | cpgShore | — | values(x.gr)[overs$srow, ]:512 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36552 | cellmeth_recounts | PrEC: 8, LNCaP: 11, DU145: 1 |  |
| 36552 | cellmeth_diffreps_PrECvsDU145 | A=18, B=0, Length=320, Event=Down, log2FC=-Inf, padj=3.84450226825195e-05 |  |
| 36552 | cellexp | id=ENSG00000069424, name=KCNAB2, PrEC=196, str=188, LNCaP=2159, str=1532, DU145=985, str=498 |  |
| 36552 | tcgaexp | gene=KCNAB2, entrez=8514, pos=chr1:6052358-6161253(+), B=422, L=413, M=403, H=484 |  |
| 36552 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36552 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |