DMR 36555 chr1:6420601-6420800 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:6420601-6420800 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | ACOT7 (0bp away) |
| ANODEV p-value | 0.00186307073903 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36555 | ACOT7 | 149 | uc001amr.3 | chr1 | 6324332 | 6420764 | - | 164 | 82.0 | 0.06 | 0 | 100.0 | E1 (67.5), I1 (14.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36555 | ACOT7 | 149 | uc001ams.3 | chr1 | 6324332 | 6445883 | - | 200 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36555 | ACOT7 | 149 | uc001amt.3 | chr1 | 6324332 | 6453826 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36555 | ACOT7 | 149 | uc001amu.3 | chr1 | 6324332 | 6453826 | - | 200 | 100.0 | 0.06 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36555 | chr1 | 6420721 | 6420990 | wgEncodeRegDnaseClusteredV2 | 5 | score:234, srow:4985 |
| 36555 | chr1 | 6419044 | 6420647 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:20, expNums:104,105,130,131,283,306,326,328,330,332,334,336,338,340,461,465,523,524,583,602, expScores:425,1000,349,468,126,748,695,705,228,917,464,578,476,670,219,336,442,183,762,207, srow:13731 |
| 36555 | chr1 | 6420632 | 6420921 | wgEncodeRegTfbsClusteredV3 | HNF4G | score:130, expCount:1, expNums:183, expScores:130, srow:13777 |
| 36555 | chr1 | 6420648 | 6420670 | tfbsConsSites | V$PPARG_02 | score:717, zScore:2.32, srow:10145 |
| 36555 | chr1 | 6420795 | 6420808 | tfbsConsSites | V$COUP_01 | score:898, zScore:2.71, srow:10146 |
| 36555 | chr1 | 6420795 | 6420814 | tfbsConsSites | V$PPARA_01 | score:734, zScore:1.65, srow:10147 |
| 36555 | chr1 | 6420797 | 6420813 | tfbsConsSites | V$PPARG_03 | score:785, zScore:1.88, srow:10148 |
| 36555 | chr1 | 6420699 | 6420699 | cosmic | COSM1177623 | srow:3364 |
| 36555 | chr1 | 6420625 | 6420631 | phastConsElements100way | lod=19 | score:285, srow:22340 |
| 36555 | chr1 | 6420653 | 6420656 | phastConsElements100way | lod=13 | score:247, srow:22341 |
| 36555 | chr1 | 6420684 | 6420687 | phastConsElements100way | lod=15 | score:262, srow:22342 |
| 36555 | chr1 | 6420708 | 6420712 | phastConsElements100way | lod=14 | score:255, srow:22343 |
| 36555 | chr1 | 6420796 | 6420807 | phastConsElements100way | lod=37 | score:351, srow:22344 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36555 | cellmeth_recounts | PrEC: 13, LNCaP: 3, DU145: 3 |  |
| 36555 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=2, Length=360, Event=Down, log2FC=-3.39, padj=0.000748018419655264 |  |
| 36555 | cellmeth_diffreps_PrECvsDU145 | A=20, B=2, Length=360, Event=Down, log2FC=-3.32, padj=0.00147810318628949 |  |
| 36555 | cellexp | id=ENSG00000097021, name=ACOT7, PrEC=12700, str=8241, LNCaP=2240, str=2875, DU145=2964, str=3293 |  |
| 36555 | tcgameth | site:cg00821310, B=0.75, L=0.83, H=0.82 |  |
| 36555 | tcgameth | site:cg10219223, B=0.73, L=0.79, H=0.78 |  |
| 36555 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36555 | tcgaexp | gene=ACOT7, entrez=11332, pos=chr1:6324332-6453826(-), B=931, L=1051, M=923, H=1026 |  |
| 36555 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |