DMR 36566 chr1:7985751-7985950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:7985751-7985950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | TNFRSF9 (0bp away) |
| ANODEV p-value | 0.00421228006339 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36566 | TNFRSF9 | 166 | uc001aot.3 | chr1 | 7975931 | 8003225 | - | 200 | 100.0 | 20.73 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36566 | chr1 | 7985644 | 7986053 | wgEncodeRegTfbsClusteredV3 | GATA2 | score:259, expCount:1, expNums:586, expScores:259, srow:17339 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36566 | cellmeth_recounts | PrEC: 5, LNCaP: 0, DU145: 3 |  |
| 36566 | cellexp | id=ENSG00000049249, name=TNFRSF9, PrEC=3, str=2, LNCaP=5, str=1, DU145=99, str=70 |  |
| 36566 | tcgaexp | gene=TNFRSF9, entrez=3604, pos=chr1:7975931-8003225(-), B=9, L=10, M=12, H=20 |  |
| 36566 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36566 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |