DMR 36585 chr1:10613401-10613600 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:10613401-10613600 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | PEX14 (0bp away) |
| ANODEV p-value | 0.000429319108033 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36585 | PEX14 | 199 | uc001arm.1 | chr1 | 10535003 | 10638484 | + | 200 | 100.0 | 0.14 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc001arn.3 | chr1 | 10535003 | 10690815 | + | 200 | 100.0 | 0.36 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc009vmu.1 | chr1 | 10535003 | 10683924 | + | 200 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc009vmv.3 | chr1 | 10535003 | 10690815 | + | 200 | 100.0 | 0.83 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc009vmw.3 | chr1 | 10588312 | 10690815 | + | 200 | 100.0 | 0.63 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc010oam.2 | chr1 | 10535003 | 10690815 | + | 200 | 100.0 | 0.83 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 36585 | PEX14 | 199 | uc010oan.2 | chr1 | 10535003 | 10690815 | + | 200 | 100.0 | 0.63 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36585 | chr1 | 10613306 | 10613610 | wgEncodeRegDnaseClusteredV2 | 6 | score:551, srow:8551 |
| 36585 | chr1 | 10613290 | 10613605 | wgEncodeRegTfbsClusteredV3 | MYC | score:296, expCount:1, expNums:575, expScores:296, srow:27331 |
| 36585 | chr1 | 10613322 | 10613605 | wgEncodeRegTfbsClusteredV3 | USF1 | score:340, expCount:3, expNums:118,161,243, expScores:156,218,340, srow:27332 |
| 36585 | chr1 | 10613332 | 10613607 | wgEncodeRegTfbsClusteredV3 | MAX | score:1000, expCount:1, expNums:576, expScores:1000, srow:27333 |
| 36585 | chr1 | 10613584 | 10613588 | phastConsElements100way | lod=21 | score:295, srow:39347 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36585 | cellmeth_recounts | PrEC: 2, LNCaP: 1, DU145: 0 |  |
| 36585 | cellexp | id=ENSG00000142655, name=PEX14, PrEC=2040, str=2504, LNCaP=1455, str=1052, DU145=1343, str=1366 |  |
| 36585 | tcgaexp | gene=PEX14, entrez=5195, pos=chr1:10535003-10690815(+), B=2169, L=1677, M=1496, H=1299 |  |
| 36585 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36585 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36585 | pubmed | gene=PEX14, G=124, GP=1, GC=10, GM=1, GPM=0, GCM=1 |  |