DMR 36587 chr1:10761201-10761400 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:10761201-10761400 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | CASZ1 (0bp away) |
| ANODEV p-value | 7.55380150184e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36587 | CASZ1 | 200 | uc001aro.4 | chr1 | 10696666 | 10856733 | - | 200 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 36587 | CASZ1 | 200 | uc001arp.2 | chr1 | 10707263 | 10856733 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36587 | chr1 | 10761189 | 10761478 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:570, expCount:3, expNums:100,101,129, expScores:570,369,154, srow:27649 |
| 36587 | chr1 | 10761232 | 10761253 | tfbsConsSites | V$HEN1_02 | score:765, zScore:1.88, srow:21778 |
| 36587 | chr1 | 10761235 | 10761250 | tfbsConsSites | V$E47_02 | score:912, zScore:2.26, srow:21779 |
| 36587 | chr1 | 10761237 | 10761248 | tfbsConsSites | V$LMO2COM_01 | score:928, zScore:1.83, srow:21780 |
| 36587 | chr1 | 10761238 | 10761247 | tfbsConsSites | V$MYOD_Q6 | score:967, zScore:1.81, srow:21781 |
| 36587 | chr1 | 10761350 | 10761373 | tfbsConsSites | V$COMP1_01 | score:789, zScore:1.77, srow:21782 |
| 36587 | chr1 | 10761379 | 10761399 | tfbsConsSites | V$PAX6_01 | score:778, zScore:2.15, srow:21783 |
| 36587 | chr1 | 10761387 | 10761401 | tfbsConsSites | V$TST1_01 | score:852, zScore:2.12, srow:21784 |
| 36587 | chr1 | 10761196 | 10761214 | phastConsElements100way | lod=24 | score:308, srow:40653 |
| 36587 | chr1 | 10761252 | 10761257 | phastConsElements100way | lod=19 | score:285, srow:40654 |
| 36587 | chr1 | 10761296 | 10761316 | phastConsElements100way | lod=76 | score:422, srow:40655 |
| 36587 | chr1 | 10761353 | 10761356 | phastConsElements100way | lod=20 | score:290, srow:40656 |
| 36587 | chr1 | 10761359 | 10761467 | phastConsElements100way | lod=716 | score:644, srow:40657 |
| 36587 | chr1 | 10760253 | 10762449 | cpgShelf | — | values(x.gr)[overs$srow, ]:506 |
- 14 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36587 | cellmeth_recounts | PrEC: 27, LNCaP: 10, DU145: 0 |  |
| 36587 | cellmeth_diffreps_PrECvsLNCaP | A=40, B=7, Length=360, Event=Down, log2FC=-2.51, padj=2.24678261091633e-05 |  |
| 36587 | cellmeth_diffreps_PrECvsDU145 | A=40, B=0, Length=420, Event=Down, log2FC=-Inf, padj=1.33128411763036e-11 |  |
| 36587 | cellexp | id=ENSG00000130940, name=CASZ1, PrEC=524, str=547, LNCaP=2281, str=1784, DU145=1216, str=750 |  |
| 36587 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36587 | tcgaexp | gene=CASZ1, entrez=54897, pos=chr1:10696666-10856733(-), B=4089, L=4912, M=4982, H=5406 |  |
| 36587 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36587 | pubmed | gene=CASZ1, G=24, GP=1, GC=13, GM=3, GPM=0, GCM=1 |  |