DMR 366 chr1:90101551-90101750 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:90101551-90101750 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | LRRC8C (0bp away) |
| ANODEV p-value | 0.0131964743534 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366 | LRRC8C | 1139 | uc001dnl.4 | chr1 | 90098644 | 90185094 | + | 200 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 366 | chr1 | 90101646 | 90101655 | wgEncodeRegDnaseClusteredV2 | 2 | score:197, srow:54256 |
| 366 | chr1 | 90101661 | 90102255 | wgEncodeRegDnaseClusteredV2 | 73 | score:861, srow:54257 |
| 366 | chr1 | 90101495 | 90102034 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:649, expCount:4, expNums:206,207,461,619, expScores:224,649,292,273, srow:187804 |
| 366 | chr1 | 90101616 | 90101991 | wgEncodeRegTfbsClusteredV3 | ZKSCAN1 | score:160, expCount:1, expNums:418, expScores:160, srow:187805 |
| 366 | chr1 | 90101697 | 90102026 | wgEncodeRegTfbsClusteredV3 | EP300 | score:122, expCount:1, expNums:401, expScores:122, srow:187806 |
| 366 | chr1 | 90101742 | 90102081 | wgEncodeRegTfbsClusteredV3 | JUN | score:1000, expCount:2, expNums:381,458, expScores:207,1000, srow:187807 |
| 366 | chr1 | 90101744 | 90102063 | wgEncodeRegTfbsClusteredV3 | JUND | score:207, expCount:1, expNums:393, expScores:207, srow:187808 |
| 366 | chr1 | 90101541 | 90101555 | phastConsElements100way | lod=24 | score:308, srow:380748 |
| 366 | chr1 | 90101293 | 90103292 | cpgShelf | — | values(x.gr)[overs$srow, ]:2014 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 366 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 366 | cellexp | id=ENSG00000171488, name=LRRC8C, PrEC=5835, str=5657, LNCaP=104, str=106, DU145=1875, str=2206 |  |
| 366 | cellexp | id=ENSG00000230735, name=RP11-413E1.4, PrEC=4, str=2, LNCaP=0, str=2, DU145=3, str=1 |  |
| 366 | cellexp | id=ENSG00000271949, name=RP11-302M6.4, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 366 | tcgaexp | gene=LRRC8C, entrez=84230, pos=chr1:90098644-90185094(+), B=613, L=432, M=508, H=642 |  |
| 366 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |