DMR 36640 chr1:19676351-19676600 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:19676351-19676600 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | CAPZB (0bp away) |
| ANODEV p-value | 1.56727953068e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36640 | CAPZB | 358 | uc001bce.3 | chr1 | 19665267 | 19812066 | - | 250 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36640 | CAPZB | 358 | uc009vpk.3 | chr1 | 19665267 | 19812066 | - | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36640 | CAPZB | 358 | uc010ocz.2 | chr1 | 19665267 | 19811201 | - | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36640 | CAPZB | 358 | uc021ohr.1 | chr1 | 19665267 | 19812066 | - | 250 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36640 | chr1 | 19676406 | 19676895 | wgEncodeRegDnaseClusteredV2 | 7 | score:542, srow:15518 |
| 36640 | chr1 | 19676370 | 19676381 | tfbsConsSites | V$AREB6_03 | score:901, zScore:2.09, srow:40335 |
| 36640 | chr1 | 19676436 | 19676446 | tfbsConsSites | V$POU6F1_01 | score:869, zScore:2.19, srow:40336 |
| 36640 | chr1 | 19676366 | 19676390 | phastConsElements100way | lod=90 | score:439, srow:75949 |
| 36640 | chr1 | 19676395 | 19676399 | phastConsElements100way | lod=29 | score:327, srow:75950 |
| 36640 | chr1 | 19676411 | 19676417 | phastConsElements100way | lod=18 | score:280, srow:75951 |
| 36640 | chr1 | 19676427 | 19676498 | phastConsElements100way | lod=262 | score:545, srow:75952 |
| 36640 | chr1 | 19676502 | 19676526 | phastConsElements100way | lod=93 | score:442, srow:75953 |
| 36640 | chr1 | 19676537 | 19676542 | phastConsElements100way | lod=24 | score:308, srow:75954 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36640 | cellmeth_recounts | PrEC: 1, LNCaP: 5, DU145: 10 |  |
| 36640 | cellexp | id=ENSG00000077549, name=CAPZB, PrEC=16031, str=12144, LNCaP=7255, str=7933, DU145=9669, str=10273 |  |
| 36640 | tcgaexp | gene=CAPZB, entrez=832, pos=chr1:19665267-19812066(-), B=16574, L=14677, M=13959, H=12545 |  |
| 36640 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36640 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36640 | pubmed | gene=CAPZB, G=18, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |