DMR 36647 chr1:20141001-20141200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:20141001-20141200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | RNF186 (0bp away) |
| ANODEV p-value | 0.0123861825582 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36647 | RNF186 | 366 | uc001bcr.3 | chr1 | 20140522 | 20141771 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36647 | chr1 | 20140586 | 20141170 | wgEncodeRegDnaseClusteredV2 | 8 | score:212, srow:15945 |
| 36647 | chr1 | 20141007 | 20141030 | tfbsConsSites | V$COMP1_01 | score:783, zScore:1.64, srow:41240 |
| 36647 | chr1 | 20141011 | 20141022 | tfbsConsSites | V$PAX4_03 | score:906, zScore:1.67, srow:41241 |
| 36647 | chr1 | 20141031 | 20141050 | tfbsConsSites | V$PPARA_01 | score:749, zScore:1.94, srow:41242 |
| 36647 | chr1 | 20141040 | 20141040 | cosmic | COSM902195 | srow:12087 |
| 36647 | chr1 | 20141107 | 20141107 | cosmic | COSM902196 | srow:12088 |
| 36647 | chr1 | 20141127 | 20141127 | cosmic | COSM1500465 | srow:12089 |
| 36647 | chr1 | 20141183 | 20141183 | cosmic | COSM678178 | srow:12090 |
| 36647 | chr1 | 20141003 | 20141009 | phastConsElements100way | lod=49 | score:379, srow:77452 |
| 36647 | chr1 | 20141017 | 20141020 | phastConsElements100way | lod=18 | score:280, srow:77453 |
| 36647 | chr1 | 20141023 | 20141026 | phastConsElements100way | lod=13 | score:247, srow:77454 |
| 36647 | chr1 | 20141029 | 20141033 | phastConsElements100way | lod=31 | score:333, srow:77455 |
| 36647 | chr1 | 20141038 | 20141041 | phastConsElements100way | lod=19 | score:285, srow:77456 |
| 36647 | chr1 | 20141050 | 20141057 | phastConsElements100way | lod=40 | score:359, srow:77457 |
| 36647 | chr1 | 20141068 | 20141069 | phastConsElements100way | lod=13 | score:247, srow:77458 |
| 36647 | chr1 | 20141071 | 20141077 | phastConsElements100way | lod=50 | score:381, srow:77459 |
| 36647 | chr1 | 20141080 | 20141081 | phastConsElements100way | lod=17 | score:274, srow:77460 |
| 36647 | chr1 | 20141083 | 20141095 | phastConsElements100way | lod=69 | score:413, srow:77461 |
| 36647 | chr1 | 20141098 | 20141104 | phastConsElements100way | lod=33 | score:340, srow:77462 |
| 36647 | chr1 | 20141109 | 20141111 | phastConsElements100way | lod=15 | score:262, srow:77463 |
| 36647 | chr1 | 20141113 | 20141123 | phastConsElements100way | lod=68 | score:411, srow:77464 |
| 36647 | chr1 | 20141129 | 20141140 | phastConsElements100way | lod=58 | score:395, srow:77465 |
| 36647 | chr1 | 20141143 | 20141144 | phastConsElements100way | lod=22 | score:300, srow:77466 |
| 36647 | chr1 | 20141150 | 20141154 | phastConsElements100way | lod=25 | score:312, srow:77467 |
- 24 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36647 | cellmeth_recounts | PrEC: 4, LNCaP: 1, DU145: 0 |  |
| 36647 | cellmeth_diffreps_PrECvsLNCaP | A=48, B=1, Length=420, Event=Down, log2FC=-5.58, padj=2.54775984955258e-12 |  |
| 36647 | cellmeth_diffreps_PrECvsDU145 | A=49, B=4, Length=420, Event=Down, log2FC=-3.61, padj=2.15652322938075e-09 |  |
| 36647 | cellexp | id=ENSG00000178828, name=RNF186, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36647 | cellexp | id=ENSG00000235434, name=RP11-91K11.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=0 |  |
| 36647 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36647 | tcgaexp | gene=RNF186, entrez=54546, pos=chr1:20140522-20141771(-), B=30, L=28, M=33, H=22 |  |
| 36647 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |