DMR 36650 chr1:20476151-20476350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:20476151-20476350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | PLA2G2F (0bp away) |
| ANODEV p-value | 0.00774306136727 |
| Frequencies | Benign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36650 | PLA2G2F | 372 | uc009vpp.1 | chr1 | 20465823 | 20476879 | + | 200 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36650 | chr1 | 20475766 | 20476290 | wgEncodeRegDnaseClusteredV2 | 9 | score:191, srow:16174 |
| 36650 | chr1 | 20476185 | 20476187 | phastConsElements100way | lod=13 | score:247, srow:78127 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36650 | cellmeth_recounts | PrEC: 12, LNCaP: 4, DU145: 0 |  |
| 36650 | cellmeth_diffreps_PrECvsLNCaP | A=40, B=0, Length=620, Event=Down, log2FC=-Inf, padj=9.68631150892396e-12 |  |
| 36650 | cellmeth_diffreps_PrECvsDU145 | A=41, B=3, Length=700, Event=Down, log2FC=-3.77, padj=4.13414078675192e-08 |  |
| 36650 | cellexp | id=ENSG00000158786, name=PLA2G2F, PrEC=0, str=4, LNCaP=25, str=13, DU145=1, str=0 |  |
| 36650 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36650 | tcgaexp | gene=PLA2G2F, entrez=64600, pos=chr1:20465823-20476879(+), B=17, L=10, M=19, H=22 |  |
| 36650 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |