DMR 36698 chr1:28199651-28199800 (150bp)

DMR Stats
Positionchr1:28199651-28199800 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesTHEMIS2 (0bp away)
ANODEV p-value0.00126262153497
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36698 THEMIS2 523 uc001boz.3 chr1 28199055 28213193 + 150 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
36698 THEMIS2 523 uc001bpa.3 chr1 28199055 28213193 + 150 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
36698 THEMIS2 523 uc001bpc.4 chr1 28199055 28213193 + 150 100.0 0.14 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
36698 THEMIS2 523 uc010ofn.2 chr1 28199055 28213193 + 150 100.0 0.47 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
36698 THEMIS2 523 uc010ofo.2 chr1 28199055 28213193 + 150 100.0 0.56 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36698 chr1 28198666 28200115 wgEncodeRegDnaseClusteredV2 101 score:1000, srow:22839
36698 chr1 28198836 28200785 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:41, expNums:61,62,78,104,105,123,124,130,131,146,163,192,207,229,275,283,306,307,308,326,328,330,332,334,336,338,340,520,521,522,523,525,563,564,577,583,585,599,602,619,637, expScores:648,524,223,481,1000,417,343,408,596,250,724,347,248,601,594,125,863,218,345,580,1000,961,983,786,1000,949,243,221,160,281,379,509,833,445,228,556,670,192,166,130,200, srow:81959
36698 chr1 28198906 28199673 wgEncodeRegTfbsClusteredV3 HMGN3 score:178, expCount:1, expNums:501, expScores:148, srow:81962
36698 chr1 28199097 28199787 wgEncodeRegTfbsClusteredV3 EZH2 score:255, expCount:2, expNums:15,40, expScores:252,255, srow:81969
36698 chr1 28199224 28199747 wgEncodeRegTfbsClusteredV3 HDAC1 score:205, expCount:1, expNums:26, expScores:205, srow:81971
36698 chr1 28199248 28199926 wgEncodeRegTfbsClusteredV3 ZNF263 score:310, expCount:2, expNums:368,553, expScores:310,231, srow:81972
36698 chr1 28199257 28199692 wgEncodeRegTfbsClusteredV3 MAX score:183, expCount:1, expNums:296, expScores:183, srow:81973
36698 chr1 28199281 28199710 wgEncodeRegTfbsClusteredV3 E2F6 score:155, expCount:1, expNums:495, expScores:155, srow:81974
36698 chr1 28199283 28199818 wgEncodeRegTfbsClusteredV3 SIN3A score:173, expCount:1, expNums:312, expScores:173, srow:81975
36698 chr1 28199458 28199893 wgEncodeRegTfbsClusteredV3 CHD1 score:155, expCount:1, expNums:287, expScores:155, srow:81976
36698 chr1 28199476 28199839 wgEncodeRegTfbsClusteredV3 ELK1 score:172, expCount:1, expNums:293, expScores:172, srow:81977
36698 chr1 28199499 28199842 wgEncodeRegTfbsClusteredV3 YY1 score:186, expCount:1, expNums:119, expScores:186, srow:81978
36698 chr1 28199531 28199966 wgEncodeRegTfbsClusteredV3 MXI1 score:181, expCount:1, expNums:298, expScores:181, srow:81979
36698 chr1 28199557 28199826 wgEncodeRegTfbsClusteredV3 GTF3C2 score:180, expCount:1, expNums:546, expScores:180, srow:81980
36698 chr1 28199559 28199848 wgEncodeRegTfbsClusteredV3 ZNF143 score:240, expCount:1, expNums:552, expScores:240, srow:81981
36698 chr1 28199573 28199922 wgEncodeRegTfbsClusteredV3 HDAC2 score:224, expCount:1, expNums:27, expScores:224, srow:81982
36698 chr1 28199589 28199812 wgEncodeRegTfbsClusteredV3 SRF score:482, expCount:1, expNums:113, expScores:482, srow:81983
36698 chr1 28199618 28199893 wgEncodeRegTfbsClusteredV3 EGR1 score:626, expCount:3, expNums:87,138,216, expScores:361,140,626, srow:81984
36698 chr1 28199623 28199886 wgEncodeRegTfbsClusteredV3 EBF1 score:185, expCount:1, expNums:86, expScores:185, srow:81985
36698 chr1 28199682 28199799 wgEncodeRegTfbsClusteredV3 ELF1 score:280, expCount:1, expNums:88, expScores:280, srow:81986
36698 chr1 28199740 28199970 wgEncodeRegTfbsClusteredV3 CTCF score:466, expCount:5, expNums:290,603,604,606,635, expScores:266,182,466,300,143, srow:81987
36698 chr1 28199258 28201257 cpgShore — values(x.gr)[overs$srow, ]:1326
  • 22 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36698 cellmeth_recounts PrEC: 12, LNCaP: 290, DU145: 0
36698 cellmeth_diffreps_PrECvsLNCaP A=19, B=1302, Length=1780, Event=Up, log2FC=6.1, padj=0
36698 cellmeth_diffreps_PrECvsDU145 A=19, B=0, Length=380, Event=Down, log2FC=-Inf, padj=2.00008702229875e-05
36698 cellmeth_diffreps_LNCaPvsDU145 A=1446.42, B=2.81, Length=2200, Event=Down, log2FC=-9.01, padj=0
36698 cellexp id=ENSG00000130775, name=THEMIS2, PrEC=377, str=352, LNCaP=6, str=12, DU145=345, str=395
36698 tcgaexp gene=THEMIS2, entrez=9473, pos=chr1:28199055-28213193(+), B=397, L=361, M=360, H=434
36698 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305