DMR 36729 chr1:36769551-36769700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:36769551-36769700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | THRAP3 (0bp away) |
| ANODEV p-value | 0.00664880800236 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36729 | THRAP3 | 652 | uc001cae.4 | chr1 | 36690017 | 36770957 | + | 150 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 0.0 |
| 36729 | THRAP3 | 652 | uc001caf.4 | chr1 | 36690017 | 36770957 | + | 150 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (100) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36729 | chr1 | 36769606 | 36769915 | wgEncodeRegDnaseClusteredV2 | 5 | score:245, srow:29184 |
| 36729 | chr1 | 36769628 | 36770031 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:221, expCount:1, expNums:228, expScores:221, srow:104295 |
| 36729 | chr1 | 36769575 | 36769590 | tfbsConsSites | V$EVI1_01 | score:773, zScore:2.23, srow:80811 |
| 36729 | chr1 | 36769647 | 36769660 | tfbsConsSites | V$GATA1_03 | score:850, zScore:1.73, srow:80812 |
| 36729 | chr1 | 36769547 | 36769557 | phastConsElements100way | lod=101 | score:450, srow:154320 |
| 36729 | chr1 | 36769559 | 36769566 | phastConsElements100way | lod=60 | score:399, srow:154321 |
| 36729 | chr1 | 36769568 | 36769605 | phastConsElements100way | lod=227 | score:530, srow:154322 |
| 36729 | chr1 | 36769613 | 36769618 | phastConsElements100way | lod=49 | score:379, srow:154323 |
| 36729 | chr1 | 36769633 | 36769651 | phastConsElements100way | lod=36 | score:348, srow:154324 |
| 36729 | chr1 | 36769662 | 36769668 | phastConsElements100way | lod=23 | score:304, srow:154325 |
| 36729 | chr1 | 36769670 | 36769675 | phastConsElements100way | lod=21 | score:295, srow:154326 |
| 36729 | chr1 | 36769687 | 36769696 | phastConsElements100way | lod=42 | score:363, srow:154327 |
| 36729 | chr1 | 36767831 | 36769830 | cpgShelf | — | values(x.gr)[overs$srow, ]:1296 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36729 | cellmeth_recounts | PrEC: 6, LNCaP: 3, DU145: 3 |  |
| 36729 | cellmeth_diffreps_PrECvsDU145 | A=35, B=6, Length=360, Event=Down, log2FC=-2.54, padj=0.000114491067822158 |  |
| 36729 | cellexp | id=ENSG00000054118, name=THRAP3, PrEC=14991, str=12064, LNCaP=17093, str=18108, DU145=11397, str=14242 |  |
| 36729 | tcgaexp | gene=THRAP3, entrez=9967, pos=chr1:36690017-36770957(+), B=11054, L=12264, M=12459, H=12633 |  |
| 36729 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |