DMR 36734 chr1:38513551-38513700 (150bp)

DMR Stats
Positionchr1:38513551-38513700 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesPOU3F1 (1100bp away)
ANODEV p-value0.00405438915014
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36734 chr1 38513521 38513895 wgEncodeRegDnaseClusteredV2 58 score:1000, srow:30691
36734 chr1 38512847 38513958 wgEncodeRegTfbsClusteredV3 EZH2 score:349, expCount:4, expNums:13,21,25,38, expScores:342,345,228,274, srow:108851
36734 chr1 38513346 38513865 wgEncodeRegTfbsClusteredV3 SIN3A score:450, expCount:1, expNums:357, expScores:450, srow:108853
36734 chr1 38513380 38513883 wgEncodeRegTfbsClusteredV3 REST score:1000, expCount:11, expNums:59,98,144,167,188,189,226,248,252,258,274, expScores:269,924,1000,378,1000,485,1000,743,1000,657,244, srow:108854
36734 chr1 38513456 38513799 wgEncodeRegTfbsClusteredV3 MXI1 score:194, expCount:1, expNums:353, expScores:194, srow:108855
36734 chr1 38513459 38513782 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:163, expCount:1, expNums:151, expScores:163, srow:108856
36734 chr1 38513507 38513746 wgEncodeRegTfbsClusteredV3 RAD21 score:181, expCount:1, expNums:149, expScores:181, srow:108857
36734 chr1 38513626 38513638 phastConsElements100way lod=74 score:420, srow:163184
36734 chr1 38513680 38513683 phastConsElements100way lod=14 score:255, srow:163185
36734 chr1 38510103 38513642 cpgIsland CpG: 312 length:3540, cpgNum:312, gcNum:2043, perCpg:17.6, perGc:57.7, obsExp:1.06, srow:915
36734 chr1 38513643 38515642 cpgShore — values(x.gr)[overs$srow, ]:1652
  • 11 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36734 cellmeth_recounts PrEC: 0, LNCaP: 290, DU145: 0
36734 cellmeth_diffreps_PrECvsLNCaP A=0, B=803, Length=960, Event=Up, log2FC=Inf, padj=0
36734 cellmeth_diffreps_LNCaPvsDU145 A=858.44, B=3.74, Length=940, Event=Down, log2FC=-7.84, padj=0
36734 cellexp id=ENSG00000224592, name=RP5-884C9.2, PrEC=13, str=12, LNCaP=2, str=1, DU145=10, str=2
36734 tcgameth site:cg12622182, B=0.27, L=0.44, H=0.41
36734 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305