DMR 36765 chr1:47183551-47183700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:47183551-47183700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | EFCAB14 (0bp away) |
| ANODEV p-value | 0.00074047124977 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36765 | EFCAB14 | 838 | uc001cqk.4 | chr1 | 47140831 | 47184736 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (84), I1 (16), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 36765 | EFCAB14 | 838 | uc010omh.1 | chr1 | 47124359 | 47184736 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (84), I1 (16), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36765 | chr1 | 47183501 | 47183690 | wgEncodeRegDnaseClusteredV2 | 4 | score:251, srow:37238 |
| 36765 | chr1 | 47183591 | 47183598 | tfbsConsSites | V$STAT4_01 | score:1000, zScore:1.65, srow:115775 |
| 36765 | chr1 | 47183642 | 47183650 | tfbsConsSites | V$AP1_C | score:953, zScore:2.12, srow:115776 |
| 36765 | chr1 | 47183644 | 47183644 | cosmic | COSM426394 | srow:31735 |
| 36765 | chr1 | 47183662 | 47183662 | cosmic | COSM1503259 | srow:31736 |
| 36765 | chr1 | 47183671 | 47183671 | cosmic | COSM1560583 | srow:31737 |
| 36765 | chr1 | 47183691 | 47183691 | cosmic | COSM910358 | srow:31738 |
| 36765 | chr1 | 47183700 | 47183700 | cosmic | COSM377098 | srow:31739 |
| 36765 | chr1 | 47183571 | 47183597 | phastConsElements100way | lod=143 | score:485, srow:209747 |
| 36765 | chr1 | 47183608 | 47183621 | phastConsElements100way | lod=83 | score:431, srow:209748 |
| 36765 | chr1 | 47183623 | 47183624 | phastConsElements100way | lod=24 | score:308, srow:209749 |
| 36765 | chr1 | 47183626 | 47183636 | phastConsElements100way | lod=100 | score:449, srow:209750 |
| 36765 | chr1 | 47183638 | 47183651 | phastConsElements100way | lod=118 | score:466, srow:209751 |
| 36765 | chr1 | 47183653 | 47183681 | phastConsElements100way | lod=260 | score:544, srow:209752 |
| 36765 | chr1 | 47183683 | 47183695 | phastConsElements100way | lod=95 | score:444, srow:209753 |
| 36765 | chr1 | 47183698 | 47183732 | phastConsElements100way | lod=217 | score:526, srow:209754 |
| 36765 | chr1 | 47182403 | 47184402 | cpgShore | — | values(x.gr)[overs$srow, ]:1952 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36765 | cellmeth_recounts | PrEC: 3, LNCaP: 1, DU145: 1 |  |
| 36765 | cellexp | id=ENSG00000159658, name=EFCAB14, PrEC=10111, str=13747, LNCaP=5461, str=6399, DU145=5307, str=5440 |  |
| 36765 | tcgaexp | gene=EFCAB14, entrez=9813, pos=chr1:47124359-47184736(-), B=10186, L=8633, M=8656, H=8413 |  |
| 36765 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36765 | pubmed | gene=EFCAB14, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |