DMR 36771 chr1:49153051-49153200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:49153051-49153200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | AGBL4 (0bp away) |
| ANODEV p-value | 0.00262760683653 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36771 | AGBL4 | 862 | uc001cru.2 | chr1 | 48998527 | 50489626 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 36771 | AGBL4 | 862 | uc001crv.1 | chr1 | 49049542 | 49511472 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 36771 | AGBL4 | 862 | uc010omw.1 | chr1 | 48998527 | 50489626 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 36771 | AGBL4 | 862 | uc010omx.1 | chr1 | 48998527 | 50489626 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 36771 | AGBL4 | 862 | uc010omy.1 | chr1 | 49049542 | 49511472 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36771 | chr1 | 49153021 | 49153415 | wgEncodeRegDnaseClusteredV2 | 12 | score:474, srow:38440 |
| 36771 | chr1 | 49152971 | 49153300 | wgEncodeRegTfbsClusteredV3 | CTCF | score:173, expCount:3, expNums:609,675,685, expScores:133,116,173, srow:137646 |
| 36771 | chr1 | 49153199 | 49153202 | phastConsElements100way | lod=14 | score:255, srow:217017 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36771 | cellmeth_recounts | PrEC: 1, LNCaP: 0, DU145: 1 |  |
| 36771 | cellexp | id=ENSG00000186094, name=AGBL4, PrEC=0, str=2, LNCaP=16, str=2, DU145=0, str=0 |  |
| 36771 | tcgaexp | gene=AGBL4, entrez=84871, pos=chr1:48998527-50489626(-), B=11, L=5, M=8, H=16 |  |
| 36771 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |