DMR 36783 chr1:54083101-54083300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:54083101-54083300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | GLIS1 (0bp away) |
| ANODEV p-value | 0.00326608459078 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36783 | GLIS1 | 905 | uc001cvr.1 | chr1 | 53971906 | 54199877 | - | 200 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36783 | chr1 | 54083146 | 54083370 | wgEncodeRegDnaseClusteredV2 | 37 | score:985, srow:40694 |
| 36783 | chr1 | 54083227 | 54083325 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:679, expCount:1, expNums:462, expScores:679, srow:145033 |
| 36783 | chr1 | 54083095 | 54083111 | phastConsElements100way | lod=53 | score:387, srow:239532 |
| 36783 | chr1 | 54083118 | 54083128 | phastConsElements100way | lod=22 | score:300, srow:239533 |
| 36783 | chr1 | 54083142 | 54083155 | phastConsElements100way | lod=44 | score:368, srow:239534 |
| 36783 | chr1 | 54083169 | 54083197 | phastConsElements100way | lod=35 | score:345, srow:239535 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36783 | cellmeth_recounts | PrEC: 5, LNCaP: 0, DU145: 5 |  |
| 36783 | cellexp | id=ENSG00000174332, name=GLIS1, PrEC=3, str=44, LNCaP=6, str=7, DU145=1, str=0 |  |
| 36783 | tcgaexp | gene=GLIS1, entrez=148979, pos=chr1:53971906-54199877(-), B=545, L=236, M=201, H=164 |  |
| 36783 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |