DMR 36784 chr1:54159251-54159500 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:54159251-54159500 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | GLIS1 (0bp away) |
| ANODEV p-value | 0.0260081949641 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36784 | GLIS1 | 905 | uc001cvr.1 | chr1 | 53971906 | 54199877 | - | 250 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36784 | chr1 | 54159006 | 54159395 | wgEncodeRegDnaseClusteredV2 | 17 | score:407, srow:40774 |
| 36784 | chr1 | 54159421 | 54159435 | wgEncodeRegDnaseClusteredV2 | 2 | score:193, srow:40775 |
| 36784 | chr1 | 54159446 | 54159695 | wgEncodeRegDnaseClusteredV2 | 25 | score:1000, srow:40776 |
| 36784 | chr1 | 54159004 | 54159283 | wgEncodeRegTfbsClusteredV3 | CTCF | score:140, expCount:1, expNums:659, expScores:140, srow:145138 |
| 36784 | chr1 | 54159259 | 54159320 | phastConsElements100way | lod=94 | score:443, srow:239832 |
| 36784 | chr1 | 54159338 | 54159350 | phastConsElements100way | lod=21 | score:295, srow:239833 |
| 36784 | chr1 | 54159360 | 54159364 | phastConsElements100way | lod=18 | score:280, srow:239834 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36784 | cellmeth_recounts | PrEC: 6, LNCaP: 3, DU145: 1 |  |
| 36784 | cellexp | id=ENSG00000174332, name=GLIS1, PrEC=3, str=44, LNCaP=6, str=7, DU145=1, str=0 |  |
| 36784 | tcgaexp | gene=GLIS1, entrez=148979, pos=chr1:53971906-54199877(-), B=545, L=236, M=201, H=164 |  |
| 36784 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |