DMR 36786 chr1:54587951-54588150 (200bp)

DMR Stats
Positionchr1:54587951-54588150 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesTCEANC2 (9758bp away)
ANODEV p-value0.00250488017199
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36786 chr1 54586666 54588155 wgEncodeRegDnaseClusteredV2 120 score:1000, srow:41044
36786 chr1 54587858 54588101 wgEncodeRegTfbsClusteredV3 EGR1 score:159, expCount:1, expNums:216, expScores:159, srow:146087
36786 chr1 54587920 54588109 wgEncodeRegTfbsClusteredV3 CTCF score:226, expCount:1, expNums:628, expScores:226, srow:146088
36786 chr1 54587579 54589578 cpgShore — values(x.gr)[overs$srow, ]:2088
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36786 cellmeth_recounts PrEC: 2, LNCaP: 1, DU145: 0
36786 cellmeth_diffreps_PrECvsLNCaP A=1, B=29, Length=400, Event=Up, log2FC=4.86, padj=6.56859188071755e-07
36786 cellmeth_diffreps_LNCaPvsDU145 A=29.93, B=1.87, Length=300, Event=Down, log2FC=-4, padj=1.18443835695888e-05
36786 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305