DMR Stats | |
---|---|
Position | chr1:54746451-54746600 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | SSBP3 (0bp away) |
ANODEV p-value | 0.000106715619252 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36787 | SSBP3 | 918 | uc001cxe.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
36787 | SSBP3 | 918 | uc001cxf.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
36787 | SSBP3 | 918 | uc001cxg.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36787 | chr1 | 54746426 | 54746730 | wgEncodeRegDnaseClusteredV2 | 20 | score:985, srow:41212 |
36787 | chr1 | 54746477 | 54746483 | phastConsElements100way | lod=27 | score:320, srow:242591 |
36787 | chr1 | 54746528 | 54746537 | phastConsElements100way | lod=27 | score:320, srow:242592 |
36787 | chr1 | 54746540 | 54746542 | phastConsElements100way | lod=14 | score:255, srow:242593 |
36787 | chr1 | 54746552 | 54746561 | phastConsElements100way | lod=16 | score:268, srow:242594 |
36787 | chr1 | 54746567 | 54746569 | phastConsElements100way | lod=13 | score:247, srow:242595 |
36787 | chr1 | 54746576 | 54746622 | phastConsElements100way | lod=184 | score:510, srow:242596 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36787 | cellmeth_recounts | PrEC: 3, LNCaP: 1, DU145: 1 | |
36787 | cellexp | id=ENSG00000157216, name=SSBP3, PrEC=1447, str=1454, LNCaP=3409, str=3650, DU145=453, str=255 | |
36787 | tcgaexp | gene=SSBP3, entrez=23648, pos=chr1:54691104-54872068(-), B=3222, L=3454, M=3289, H=3348 | |
36787 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 | |
36787 | pubmed | gene=SSBP3, G=13, GP=0, GC=2, GM=0, GPM=0, GCM=0 |