DMR 36816 chr1:87400301-87400450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:87400301-87400450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | HS2ST1 (0bp away) |
| ANODEV p-value | 0.00263935444023 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36816 | HS2ST1 | 1116 | uc001dmc.4 | chr1 | 87380335 | 87564125 | + | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36816 | HS2ST1 | 1116 | uc010osk.2 | chr1 | 87380335 | 87575681 | + | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36816 | chr1 | 87400408 | 87400657 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:178, expCount:1, expNums:160, expScores:178, srow:184811 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36816 | cellmeth_recounts | PrEC: 5, LNCaP: 5, DU145: 1 |  |
| 36816 | cellexp | id=ENSG00000153936, name=HS2ST1, PrEC=2822, str=5650, LNCaP=1257, str=2014, DU145=1853, str=2077 |  |
| 36816 | cellexp | id=ENSG00000267734, name=RP4-604K5.3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36816 | tcgaexp | gene=HS2ST1, entrez=9653, pos=chr1:87380335-87575681(+), B=2968, L=3461, M=3745, H=4184 |  |
| 36816 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |