DMR 36835 chr1:111862901-111863100 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:111862901-111863100 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | CHIA (0bp away) |
| ANODEV p-value | 0.012972844459 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36835 | CHIA | 1320 | uc001eaq.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc001ear.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc001eas.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc001eat.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc001eau.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc001eav.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc009wgc.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100) | 100.0 |
| 36835 | CHIA | 1320 | uc009wgd.4 | chr1 | 111833474 | 111863188 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100) | 100.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36835 | chr1 | 111862766 | 111863010 | wgEncodeRegDnaseClusteredV2 | 4 | score:225, srow:62314 |
| 36835 | chr1 | 111862745 | 111863059 | wgEncodeRegTfbsClusteredV3 | CTCF | score:219, expCount:2, expNums:0,636, expScores:219,104, srow:218358 |
| 36835 | chr1 | 111862750 | 111862999 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:138, expCount:1, expNums:204, expScores:138, srow:218359 |
| 36835 | chr1 | 111862905 | 111862905 | cosmic | COSM381247 | srow:53621 |
| 36835 | chr1 | 111862905 | 111862905 | cosmic | COSM381248 | srow:53622 |
| 36835 | chr1 | 111862916 | 111862916 | cosmic | COSM674355 | srow:53623 |
| 36835 | chr1 | 111862916 | 111862916 | cosmic | COSM674356 | srow:53624 |
| 36835 | chr1 | 111862985 | 111862985 | cosmic | COSM279884 | srow:53625 |
| 36835 | chr1 | 111862985 | 111862985 | cosmic | COSM279883 | srow:53626 |
| 36835 | chr1 | 111863004 | 111863004 | cosmic | COSM1639431 | srow:53627 |
| 36835 | chr1 | 111863004 | 111863004 | cosmic | COSM1639432 | srow:53628 |
| 36835 | chr1 | 111863008 | 111863008 | cosmic | COSM201214 | srow:53629 |
| 36835 | chr1 | 111863039 | 111863039 | cosmic | COSM358187 | srow:53630 |
| 36835 | chr1 | 111863039 | 111863039 | cosmic | COSM358188 | srow:53631 |
| 36835 | chr1 | 111863047 | 111863047 | cosmic | COSM201215 | srow:53632 |
| 36835 | chr1 | 111863055 | 111863055 | cosmic | COSM893799 | srow:53633 |
| 36835 | chr1 | 111863055 | 111863055 | cosmic | COSM893800 | srow:53634 |
| 36835 | chr1 | 111863082 | 111863082 | cosmic | COSM310089 | srow:53635 |
| 36835 | chr1 | 111863082 | 111863082 | cosmic | COSM310088 | srow:53636 |
| 36835 | chr1 | 111862907 | 111862913 | phastConsElements100way | lod=14 | score:255, srow:462227 |
| 36835 | chr1 | 111862918 | 111862919 | phastConsElements100way | lod=15 | score:262, srow:462228 |
| 36835 | chr1 | 111862939 | 111862940 | phastConsElements100way | lod=22 | score:300, srow:462229 |
| 36835 | chr1 | 111862942 | 111862949 | phastConsElements100way | lod=72 | score:417, srow:462230 |
| 36835 | chr1 | 111862951 | 111862955 | phastConsElements100way | lod=19 | score:285, srow:462231 |
| 36835 | chr1 | 111862963 | 111862964 | phastConsElements100way | lod=27 | score:320, srow:462232 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36835 | cellmeth_recounts | PrEC: 4, LNCaP: 3, DU145: 1 |  |
| 36835 | cellexp | id=ENSG00000134216, name=CHIA, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=0 |  |
| 36835 | cellexp | id=ENSG00000229283, name=RP5-1125M8.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36835 | tcgaexp | gene=CHIA, entrez=27159, pos=chr1:111833474-111863188(+), B=11, L=0, M=0, H=0 |  |
| 36835 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |