DMR 36852 chr1:151586151-151586350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:151586151-151586350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | SNX27 (0bp away) |
| ANODEV p-value | 2.97368654414e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36852 | SNX27 | 1679 | uc001eyn.1 | chr1 | 151584662 | 151671559 | + | 200 | 100.0 | 1.48 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36852 | SNX27 | 1679 | uc031ppc.1 | chr1 | 151584541 | 151671559 | + | 200 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36852 | chr1 | 151585666 | 151586290 | wgEncodeRegDnaseClusteredV2 | 25 | score:262, srow:70427 |
| 36852 | chr1 | 151585882 | 151586285 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:220, expCount:1, expNums:247, expScores:220, srow:250427 |
| 36852 | chr1 | 151586053 | 151586416 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:289, expCount:1, expNums:240, expScores:289, srow:250428 |
| 36852 | chr1 | 151586068 | 151586343 | wgEncodeRegTfbsClusteredV3 | TAL1 | score:143, expCount:1, expNums:542, expScores:143, srow:250429 |
| 36852 | chr1 | 151586153 | 151586159 | phastConsElements100way | lod=16 | score:268, srow:533933 |
| 36852 | chr1 | 151586205 | 151586208 | phastConsElements100way | lod=14 | score:255, srow:533934 |
| 36852 | chr1 | 151586223 | 151586236 | phastConsElements100way | lod=13 | score:247, srow:533935 |
| 36852 | chr1 | 151586258 | 151586262 | phastConsElements100way | lod=13 | score:247, srow:533936 |
| 36852 | chr1 | 151585206 | 151587205 | cpgShore | — | values(x.gr)[overs$srow, ]:3092 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36852 | cellmeth_recounts | PrEC: 2, LNCaP: 11, DU145: 4 |  |
| 36852 | cellexp | id=ENSG00000143376, name=SNX27, PrEC=1886, str=2165, LNCaP=3031, str=3565, DU145=5428, str=4743 |  |
| 36852 | tcgaexp | gene=SNX27, entrez=81609, pos=chr1:151584541-151671559(+), B=3082, L=2673, M=2770, H=2970 |  |
| 36852 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36852 | pubmed | gene=SNX27, G=40, GP=0, GC=5, GM=0, GPM=0, GCM=0 |  |