DMR 36865 chr1:155181501-155181650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:155181501-155181650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | MTX1 (0bp away) |
| ANODEV p-value | 0.000476290666468 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36865 | MTX1 | 1817 | uc001fjb.3 | chr1 | 155178490 | 155183624 | + | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 36865 | MTX1 | 1817 | uc001fjc.3 | chr1 | 155178490 | 155183624 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36865 | chr1 | 155181261 | 155181555 | wgEncodeRegDnaseClusteredV2 | 3 | score:428, srow:72890 |
| 36865 | chr1 | 155181581 | 155181750 | wgEncodeRegDnaseClusteredV2 | 18 | score:574, srow:72891 |
| 36865 | chr1 | 155181565 | 155181571 | phastConsElements100way | lod=26 | score:316, srow:550518 |
| 36865 | chr1 | 155181581 | 155181615 | phastConsElements100way | lod=82 | score:430, srow:550519 |
| 36865 | chr1 | 155181621 | 155181661 | phastConsElements100way | lod=186 | score:511, srow:550520 |
| 36865 | chr1 | 155180981 | 155182980 | cpgShelf | — | values(x.gr)[overs$srow, ]:2740 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36865 | cellmeth_recounts | PrEC: 11, LNCaP: 1, DU145: 0 |  |
| 36865 | cellmeth_diffreps_PrECvsLNCaP | A=16, B=1, Length=260, Event=Down, log2FC=-4, padj=0.00219227506621541 |  |
| 36865 | cellmeth_diffreps_PrECvsDU145 | A=16, B=0, Length=340, Event=Down, log2FC=-Inf, padj=0.000142423904773295 |  |
| 36865 | cellexp | id=ENSG00000173171, name=MTX1, PrEC=914, str=499, LNCaP=983, str=1063, DU145=908, str=1617 |  |
| 36865 | cellexp | id=ENSG00000236263, name=RP11-263K19.6, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36865 | tcgaexp | gene=MTX1, entrez=4580, pos=chr1:155178490-155183624(+), B=1826, L=2129, M=2066, H=1869 |  |
| 36865 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36865 | pubmed | gene=MTX1, G=55, GP=0, GC=4, GM=0, GPM=0, GCM=0 |  |
| 36865 | pubmed | gene=GBAP1, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |