DMR 36874 chr1:156358501-156358650 (150bp)

DMR Stats
Positionchr1:156358501-156358650 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesRHBG (3487bp away)
ANODEV p-value0.00121481303131
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36874 chr1 156357666 156358815 wgEncodeRegDnaseClusteredV2 41 score:1000, srow:73727
36874 chr1 156357504 156358988 wgEncodeRegTfbsClusteredV3 EZH2 score:401, expCount:3, expNums:21,36,43, expScores:401,214,278, srow:267906
36874 chr1 156357615 156358833 wgEncodeRegTfbsClusteredV3 SUZ12 score:154, expCount:1, expNums:578, expScores:151, srow:267907
36874 chr1 156358258 156358573 wgEncodeRegTfbsClusteredV3 POLR2A score:133, expCount:1, expNums:445, expScores:133, srow:267908
36874 chr1 156358330 156358645 wgEncodeRegTfbsClusteredV3 CHD2 score:209, expCount:1, expNums:427, expScores:209, srow:267909
36874 chr1 156358363 156358747 wgEncodeRegTfbsClusteredV3 YY1 score:204, expCount:2, expNums:162,203, expScores:204,158, srow:267910
36874 chr1 156358466 156358741 wgEncodeRegTfbsClusteredV3 ELF1 score:201, expCount:1, expNums:175, expScores:201, srow:267911
36874 chr1 156358559 156358575 tfbsConsSites V$YY1_01 score:871, zScore:1.89, srow:316988
36874 chr1 156358562 156358575 tfbsConsSites V$SOX9_B1 score:851, zScore:1.65, srow:316989
36874 chr1 156358456 156358539 phastConsElements100way lod=148 score:488, srow:558578
36874 chr1 156358547 156358548 phastConsElements100way lod=17 score:274, srow:558579
36874 chr1 156358554 156358572 phastConsElements100way lod=89 score:438, srow:558580
36874 chr1 156358620 156358622 phastConsElements100way lod=13 score:247, srow:558581
36874 chr1 156358253 156360252 cpgShore — values(x.gr)[overs$srow, ]:3280
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36874 cellmeth_recounts PrEC: 1, LNCaP: 505, DU145: 40
36874 cellmeth_diffreps_PrECvsLNCaP A=135, B=1828, Length=1520, Event=Up, log2FC=3.76, padj=0
36874 cellmeth_diffreps_PrECvsDU145 A=3, B=83, Length=900, Event=Up, log2FC=4.79, padj=0
36874 cellmeth_diffreps_LNCaPvsDU145 A=1940.32, B=101.96, Length=1200, Event=Down, log2FC=-4.25, padj=0
36874 cellexp id=ENSG00000237390, name=RP11-139I14.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
36874 tcgameth site:cg15575683, B=0.27, L=0.37, H=0.4
36874 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305