DMR 36890 chr1:165324701-165324900 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:165324701-165324900 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | LMX1A (0bp away) |
| ANODEV p-value | 2.50329277194e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36890 | LMX1A | 2072 | uc001gcz.2 | chr1 | 165171104 | 165325478 | - | 200 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (41.5), E2 (49), I2 (10), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36890 | LMX1A | 2072 | uc021pdz.1 | chr1 | 165171104 | 165325952 | - | 200 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (41.5), E2 (49), I2 (10), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36890 | chr1 | 165324401 | 165325095 | wgEncodeRegDnaseClusteredV2 | 28 | score:892, srow:78651 |
| 36890 | chr1 | 165321389 | 165326240 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:713, expCount:7, expNums:3,6,15,21,36,38,40, expScores:129,312,236,384,239,239,227, srow:287183 |
| 36890 | chr1 | 165324284 | 165325086 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:278, expCount:1, expNums:348, expScores:215, srow:287191 |
| 36890 | chr1 | 165324369 | 165324984 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:584, expCount:1, expNums:4, expScores:584, srow:287192 |
| 36890 | chr1 | 165324523 | 165325635 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:297, expCount:2, expNums:358,578, expScores:109,189, srow:287193 |
| 36890 | chr1 | 165324584 | 165324853 | wgEncodeRegTfbsClusteredV3 | HDAC6 | score:141, expCount:1, expNums:28, expScores:141, srow:287194 |
| 36890 | chr1 | 165324733 | 165324756 | tfbsConsSites | V$BRACH_01 | score:687, zScore:1.84, srow:341381 |
| 36890 | chr1 | 165324788 | 165324788 | cosmic | COSM1335897 | srow:82651 |
| 36890 | chr1 | 165324794 | 165324794 | cosmic | COSM400883 | srow:82652 |
| 36890 | chr1 | 165324715 | 165324803 | phastConsElements100way | lod=439 | score:596, srow:593529 |
| 36890 | chr1 | 165324812 | 165324821 | phastConsElements100way | lod=42 | score:363, srow:593530 |
| 36890 | chr1 | 165324829 | 165324834 | phastConsElements100way | lod=26 | score:316, srow:593531 |
| 36890 | chr1 | 165324862 | 165324865 | phastConsElements100way | lod=21 | score:295, srow:593532 |
| 36890 | chr1 | 165324886 | 165324898 | phastConsElements100way | lod=42 | score:363, srow:593533 |
| 36890 | chr1 | 165324192 | 165326328 | cpgIsland | CpG: 181 | length:2137, cpgNum:181, gcNum:1404, perCpg:16.9, perGc:65.7, obsExp:0.79, srow:1885 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36890 | cellmeth_recounts | PrEC: 0, LNCaP: 132, DU145: 24 |  |
| 36890 | cellmeth_diffreps_PrECvsLNCaP | A=2, B=223, Length=1080, Event=Up, log2FC=6.8, padj=0 |  |
| 36890 | cellmeth_diffreps_PrECvsDU145 | A=0, B=22, Length=380, Event=Up, log2FC=Inf, padj=2.6934033431747e-06 |  |
| 36890 | cellmeth_diffreps_LNCaPvsDU145 | A=238.4, B=31.8, Length=1040, Event=Down, log2FC=-2.91, padj=0 |  |
| 36890 | cellexp | id=ENSG00000162761, name=LMX1A, PrEC=0, str=0, LNCaP=2, str=2, DU145=0, str=0 |  |
| 36890 | tcgameth | site:cg14662355, B=0.1, L=0.29, H=0.36 |  |
| 36890 | tcgaexp | gene=LMX1A, entrez=4009, pos=chr1:165171104-165325952(-), B=2, L=0, M=1, H=4 |  |
| 36890 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36890 | pubmed | gene=LMX1A, G=139, GP=0, GC=19, GM=10, GPM=0, GCM=10 |  |