DMR 36896 chr1:167666301-167666500 (200bp)

DMR Stats
Positionchr1:167666301-167666500 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesRCSD1 (0bp away)
ANODEV p-value0.00697794123555
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36896 RCSD1 2098 uc001gem.3 chr1 167599474 167675486 + 200 100.0 0.13 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (17.5), E6 (82.5), I6 (0), E7 (0) 0.0
36896 RCSD1 2098 uc010pli.2 chr1 167599474 167675486 + 200 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (17.5), E5 (82.5), I5 (0), E6 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36896 chr1 167666352 167666366 tfbsConsSites V$TATA_01 score:884, zScore:2.05, srow:346484
36896 chr1 167666465 167666488 tfbsConsSites V$HTF_01 score:793, zScore:2.32, srow:346485
36896 chr1 167666467 167666481 tfbsConsSites V$TAXCREB_01 score:804, zScore:2.18, srow:346486
36896 chr1 167666469 167666485 tfbsConsSites V$XBP1_01 score:824, zScore:2.45, srow:346487
36896 chr1 167666378 167666378 cosmic COSM1335995 srow:83647
36896 chr1 167666384 167666384 cosmic COSM899091 srow:83648
36896 chr1 167666434 167666434 cosmic COSM899092 srow:83649
36896 chr1 167666442 167666442 cosmic COSM899093 srow:83650
36896 chr1 167666480 167666480 cosmic COSM1263959 srow:83651
36896 chr1 167666487 167666487 cosmic COSM1237914 srow:83652
36896 chr1 167666491 167666491 cosmic COSM331901 srow:83653
36896 chr1 167666500 167666500 cosmic COSM334204 srow:83654
36896 chr1 167666333 167666343 phastConsElements100way lod=89 score:438, srow:600752
36896 chr1 167666345 167666352 phastConsElements100way lod=50 score:381, srow:600753
36896 chr1 167666354 167666355 phastConsElements100way lod=17 score:274, srow:600754
36896 chr1 167666357 167666367 phastConsElements100way lod=62 score:402, srow:600755
36896 chr1 167666369 167666391 phastConsElements100way lod=88 score:437, srow:600756
36896 chr1 167666393 167666397 phastConsElements100way lod=43 score:366, srow:600757
36896 chr1 167666399 167666403 phastConsElements100way lod=29 score:327, srow:600758
36896 chr1 167666405 167666409 phastConsElements100way lod=47 score:375, srow:600759
36896 chr1 167666424 167666426 phastConsElements100way lod=20 score:290, srow:600760
36896 chr1 167666439 167666448 phastConsElements100way lod=77 score:423, srow:600761
36896 chr1 167666450 167666463 phastConsElements100way lod=67 score:410, srow:600762
36896 chr1 167666468 167666472 phastConsElements100way lod=30 score:330, srow:600763
36896 chr1 167666474 167666481 phastConsElements100way lod=46 score:373, srow:600764
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Omics Overlaps

Dmrid Omic Set Data Plot
36896 cellmeth_recounts PrEC: 7, LNCaP: 0, DU145: 0
36896 cellexp id=ENSG00000198771, name=RCSD1, PrEC=11, str=0, LNCaP=2, str=3, DU145=20, str=9
36896 tcgaexp gene=RCSD1, entrez=92241, pos=chr1:167599474-167675486(+), B=543, L=352, M=367, H=522
36896 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305