DMR 36903 chr1:178513001-178513200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:178513001-178513200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | TEX35, C1orf220 (0bp away) |
| ANODEV p-value | 0.00639206896184 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36903 | TEX35 | 2203 | uc001glv.1 | chr1 | 178482212 | 178517734 | + | 200 | 100.0 | 0.06 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (100), E15 (0), I15 (0), E16 (0) | 0.0 |
| 36903 | C1orf220 | 2204 | uc001glx.1 | chr1 | 178511931 | 178518024 | + | 200 | 100.0 | 0.17 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36903 | chr1 | 178512981 | 178513190 | wgEncodeRegDnaseClusteredV2 | 2 | score:103, srow:84564 |
| 36903 | chr1 | 178512357 | 178514356 | cpgShore | — | values(x.gr)[overs$srow, ]:3587 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36903 | cellmeth_recounts | PrEC: 5, LNCaP: 9, DU145: 12 |  |
| 36903 | cellexp | id=ENSG00000184909, name=C1ORF220, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36903 | cellexp | id=ENSG00000213057, name=C1orf220, PrEC=3, str=2, LNCaP=2, str=2, DU145=6, str=6 |  |
| 36903 | cellexp | id=ENSG00000240021, name=TEX35, PrEC=0, str=0, LNCaP=2, str=2, DU145=3, str=2 |  |
| 36903 | tcgaexp | gene=TEX35, entrez=84066, pos=chr1:178482212-178517734(+), B=2, L=1, M=2, H=1 |  |
| 36903 | tcgaexp | gene=C1orf220, entrez=400798, pos=chr1:178511931-178518024(+), B=15, L=10, M=12, H=17 |  |
| 36903 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |