DMR 36905 chr1:179112801-179112950 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:179112801-179112950 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | ABL2 (0bp away) |
| ANODEV p-value | 0.00472690322555 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36905 | ABL2 | 2212 | uc001gmj.4 | chr1 | 179068462 | 179198819 | - | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36905 | ABL2 | 2212 | uc009wxe.3 | chr1 | 179079716 | 179198819 | - | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 36905 | ABL2 | 2212 | uc010pnf.2 | chr1 | 179068462 | 179198819 | - | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 36905 | ABL2 | 2212 | uc010png.2 | chr1 | 179068462 | 179198819 | - | 150 | 100.0 | 0.36 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36905 | ABL2 | 2212 | uc010pnh.2 | chr1 | 179068462 | 179198819 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36905 | chr1 | 179112506 | 179112815 | wgEncodeRegDnaseClusteredV2 | 77 | score:1000, srow:84912 |
| 36905 | chr1 | 179112018 | 179112944 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:337, expCount:2, expNums:66,116, expScores:300,159, srow:309804 |
| 36905 | chr1 | 179112166 | 179112858 | wgEncodeRegTfbsClusteredV3 | FOS | score:1000, expCount:5, expNums:457,556,557,558,559, expScores:196,277,619,532,712, srow:309818 |
| 36905 | chr1 | 179112187 | 179112853 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:1000, expCount:6, expNums:411,565,566,567,568,569, expScores:117,181,680,669,687,226, srow:309820 |
| 36905 | chr1 | 179112359 | 179112898 | wgEncodeRegTfbsClusteredV3 | EP300 | score:472, expCount:2, expNums:60,401, expScores:411,472, srow:309822 |
| 36905 | chr1 | 179112484 | 179112823 | wgEncodeRegTfbsClusteredV3 | JUN | score:297, expCount:1, expNums:381, expScores:297, srow:309823 |
| 36905 | chr1 | 179112504 | 179112873 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:272, expCount:1, expNums:109, expScores:272, srow:309824 |
| 36905 | chr1 | 179112553 | 179112816 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:412, expCount:1, expNums:378, expScores:412, srow:309825 |
| 36905 | chr1 | 179112562 | 179112891 | wgEncodeRegTfbsClusteredV3 | RFX5 | score:153, expCount:1, expNums:406, expScores:153, srow:309826 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36905 | cellmeth_recounts | PrEC: 2, LNCaP: 11, DU145: 1 |  |
| 36905 | cellexp | id=ENSG00000143322, name=ABL2, PrEC=5055, str=11904, LNCaP=1282, str=1641, DU145=11778, str=16871 |  |
| 36905 | tcgaexp | gene=ABL2, entrez=27, pos=chr1:179068462-179198819(-), B=1501, L=1642, M=1768, H=1925 |  |
| 36905 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |