DMR 36907 chr1:179713301-179713550 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:179713301-179713550 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | FAM163A (0bp away) |
| ANODEV p-value | 0.000104381400012 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36907 | FAM163A | 2234 | uc001gnj.3 | chr1 | 179712298 | 179785333 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36907 | FAM163A | 2234 | uc009wxj.3 | chr1 | 179696915 | 179785333 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 36907 | FAM163A | 2234 | uc009wxk.3 | chr1 | 179712298 | 179785333 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36907 | chr1 | 179711726 | 179713695 | wgEncodeRegDnaseClusteredV2 | 64 | score:1000, srow:85117 |
| 36907 | chr1 | 179711456 | 179714415 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:578, expCount:8, expNums:6,15,17,19,21,36,40,43, expScores:354,352,168,99,372,411,217,286, srow:310507 |
| 36907 | chr1 | 179713433 | 179713442 | tfbsConsSites | V$HSF2_01 | score:927, zScore:1.9, srow:374124 |
| 36907 | chr1 | 179711948 | 179713951 | cpgIsland | CpG: 199 | length:2004, cpgNum:199, gcNum:1391, perCpg:19.9, perGc:69.4, obsExp:0.83, srow:1960 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36907 | cellmeth_recounts | PrEC: 0, LNCaP: 66, DU145: 8 |  |
| 36907 | cellmeth_diffreps_PrECvsLNCaP | A=6, B=84, Length=740, Event=Up, log2FC=3.81, padj=0 |  |
| 36907 | cellmeth_diffreps_LNCaPvsDU145 | A=65.21, B=12.16, Length=520, Event=Down, log2FC=-2.42, padj=8.73111777943756e-08 |  |
| 36907 | cellexp | id=ENSG00000143340, name=FAM163A, PrEC=0, str=2, LNCaP=0, str=0, DU145=0, str=0 |  |
| 36907 | tcgaexp | gene=FAM163A, entrez=148753, pos=chr1:179696915-179785333(+), B=34, L=14, M=7, H=9 |  |
| 36907 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36907 | pubmed | gene=FAM163A, G=2, GP=0, GC=2, GM=0, GPM=0, GCM=0 |  |