DMR 36918 chr1:183386501-183386650 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:183386501-183386650 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | NMNAT2 (0bp away) |
| ANODEV p-value | 0.00203065608681 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36918 | NMNAT2 | 2273 | uc001gqc.2 | chr1 | 183217372 | 183387634 | - | 150 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36918 | chr1 | 183386421 | 183386615 | wgEncodeRegDnaseClusteredV2 | 4 | score:222, srow:87371 |
| 36918 | chr1 | 183385736 | 183386545 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:168, expCount:1, expNums:578, expScores:168, srow:319224 |
| 36918 | chr1 | 183386188 | 183387665 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:819, expCount:6, expNums:15,21,36,38,40,43, expScores:486,390,246,277,306,726, srow:319244 |
| 36918 | chr1 | 183386553 | 183386573 | tfbsConsSites | V$NRSF_01 | score:712, zScore:1.75, srow:383379 |
| 36918 | chr1 | 183386576 | 183386589 | tfbsConsSites | V$SRF_Q6 | score:824, zScore:1.9, srow:383380 |
| 36918 | chr1 | 183386590 | 183386599 | tfbsConsSites | V$CDPCR3HD_01 | score:924, zScore:2.43, srow:383381 |
| 36918 | chr1 | 183386563 | 183386589 | phastConsElements100way | lod=37 | score:351, srow:661521 |
| 36918 | chr1 | 183386635 | 183386644 | phastConsElements100way | lod=15 | score:262, srow:661522 |
| 36918 | chr1 | 183386001 | 183387664 | cpgIsland | CpG: 114 | length:1664, cpgNum:114, gcNum:993, perCpg:13.7, perGc:59.7, obsExp:0.81, srow:1990 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36918 | cellmeth_recounts | PrEC: 0, LNCaP: 15, DU145: 6 |  |
| 36918 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=15, Length=360, Event=Up, log2FC=Inf, padj=0.000225236251108575 |  |
| 36918 | cellexp | id=ENSG00000157064, name=NMNAT2, PrEC=199, str=208, LNCaP=507, str=287, DU145=436, str=232 |  |
| 36918 | tcgaexp | gene=NMNAT2, entrez=23057, pos=chr1:183217372-183387634(-), B=134, L=111, M=113, H=197 |  |