DMR 36946 chr1:204118951-204119100 (150bp)

DMR Stats
Positionchr1:204118951-204119100 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesETNK2 (0bp away)
ANODEV p-value0.000316194710531
FrequenciesBenign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36946 ETNK2 2421 uc001han.4 chr1 204100190 204121307 - 150 100.0 0.57 0 0.0 E1 (0), I1 (7.33), E2 (93.33), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
36946 ETNK2 2421 uc001hao.4 chr1 204100190 204121307 - 150 100.0 1.29 0 0.0 E1 (0), I1 (7.33), E2 (93.33), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
36946 ETNK2 2421 uc010pqs.2 chr1 204100190 204121307 - 150 100.0 0.27 0 0.0 E1 (0), I1 (7.33), E2 (93.33), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
36946 ETNK2 2421 uc010pqt.2 chr1 204100190 204121307 - 150 100.0 0.64 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36946 chr1 204118786 204119295 wgEncodeRegDnaseClusteredV2 12 score:290, srow:95686
36946 chr1 204119002 204119175 wgEncodeRegTfbsClusteredV3 EGR1 score:448, expCount:1, expNums:216, expScores:448, srow:350258
36946 chr1 204119069 204119292 wgEncodeRegTfbsClusteredV3 CTCF score:380, expCount:2, expNums:628,688, expScores:380,135, srow:350259
36946 chr1 204118955 204118964 tfbsConsSites V$HSF2_01 score:927, zScore:1.9, srow:422113
36946 chr1 204119015 204119033 tfbsConsSites V$AHRARNT_02 score:823, zScore:2.64, srow:422114
36946 chr1 204119024 204119042 tfbsConsSites V$PAX2_01 score:806, zScore:2.48, srow:422115
36946 chr1 204118945 204118994 phastConsElements100way lod=503 score:609, srow:722827
36946 chr1 204118996 204119006 phastConsElements100way lod=112 score:461, srow:722828
36946 chr1 204119008 204119012 phastConsElements100way lod=51 score:383, srow:722829
36946 chr1 204119014 204119024 phastConsElements100way lod=121 score:468, srow:722830
36946 chr1 204119026 204119030 phastConsElements100way lod=58 score:395, srow:722831
36946 chr1 204119034 204119042 phastConsElements100way lod=57 score:394, srow:722832
36946 chr1 204119044 204119081 phastConsElements100way lod=442 score:596, srow:722833
36946 chr1 204119083 204119092 phastConsElements100way lod=144 score:485, srow:722834
36946 chr1 204119094 204119094 phastConsElements100way lod=16 score:268, srow:722835
36946 chr1 204119100 204119110 phastConsElements100way lod=31 score:333, srow:722836
36946 chr1 204118399 204120398 cpgShore — values(x.gr)[overs$srow, ]:3831
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36946 cellmeth_recounts PrEC: 10, LNCaP: 120, DU145: 0
36946 cellmeth_diffreps_PrECvsLNCaP A=15, B=105, Length=500, Event=Up, log2FC=2.81, padj=0
36946 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442
36946 cellmeth_diffreps_LNCaPvsDU145 A=112.25, B=1.87, Length=500, Event=Down, log2FC=-5.91, padj=0
36946 cellexp id=ENSG00000143845, name=ETNK2, PrEC=1080, str=204, LNCaP=76, str=34, DU145=396, str=283
36946 tcgaexp gene=ETNK2, entrez=55224, pos=chr1:204100190-204121307(-), B=1373, L=722, M=616, H=498
36946 pubmed gene=ETNK2, G=4, GP=0, GC=0, GM=0, GPM=0, GCM=0