DMR 36952 chr1:205312301-205312450 (150bp)

DMR Stats
Positionchr1:205312301-205312450 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesKLHDC8A (0bp away)
ANODEV p-value0.00332600987978
FrequenciesBenign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36952 KLHDC8A 2446 uc001hcf.2 chr1 205305193 205326128 - 150 100.0 0.13 0 0.0 E1 (0), I1 (0), E2 (62.67), I2 (37.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
36952 KLHDC8A 2446 uc001hcg.2 chr1 205305193 205326218 - 150 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.67), I5 (37.33), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
36952 KLHDC8A 2446 uc010prg.2 chr1 205305193 205326128 - 150 100.0 0.07 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
36952 KLHDC8A 2446 uc031prw.1 chr1 205305193 205326218 - 150 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (62.67), I4 (37.33), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
36952 KLHDC8A 2446 uc031prx.1 chr1 205305193 205326218 - 150 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (62.67), I3 (37.33), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36952 chr1 205312326 205312355 wgEncodeRegDnaseClusteredV2 2 score:102, srow:96914
36952 chr1 205312156 205314231 wgEncodeRegTfbsClusteredV3 EZH2 score:892, expCount:8, expNums:3,15,19,21,36,38,40,43, expScores:144,309,129,498,311,364,233,292, srow:354967
36952 chr1 205312314 205312913 wgEncodeRegTfbsClusteredV3 CTBP2 score:125, expCount:1, expNums:348, expScores:125, srow:354968
36952 chr1 205312363 205312374 tfbsConsSites V$MEIS1_01 score:910, zScore:1.92, srow:426271
36952 chr1 205312369 205312383 tfbsConsSites V$CDPCR3_01 score:824, zScore:2.46, srow:426272
36952 chr1 205312382 205312409 tfbsConsSites V$PAX5_02 score:780, zScore:1.97, srow:426273
36952 chr1 205312412 205312421 tfbsConsSites V$NCX_01 score:898, zScore:2.36, srow:426274
36952 chr1 205312413 205312419 tfbsConsSites V$NKX25_01 score:948, zScore:1.73, srow:426275
36952 chr1 205312418 205312432 tfbsConsSites V$CDP_02 score:829, zScore:1.94, srow:426276
36952 chr1 205312425 205312438 tfbsConsSites V$MRF2_01 score:845, zScore:2.05, srow:426277
36952 chr1 205312364 205312364 cosmic COSM1338197 srow:103422
36952 chr1 205312382 205312382 cosmic COSM1338198 srow:103423
36952 chr1 205312382 205312382 cosmic COSM80077 srow:103424
36952 chr1 205312401 205312401 cosmic COSM1500773 srow:103425
36952 chr1 205312409 205312409 cosmic COSM128339 srow:103426
36952 chr1 205312350 205312363 phastConsElements100way lod=110 score:459, srow:729672
36952 chr1 205312365 205312369 phastConsElements100way lod=57 score:394, srow:729673
36952 chr1 205312371 205312384 phastConsElements100way lod=164 score:498, srow:729674
36952 chr1 205312386 205312390 phastConsElements100way lod=53 score:387, srow:729675
36952 chr1 205312392 205312396 phastConsElements100way lod=52 score:385, srow:729676
36952 chr1 205312401 205312420 phastConsElements100way lod=191 score:513, srow:729677
36952 chr1 205312422 205312423 phastConsElements100way lod=29 score:327, srow:729678
36952 chr1 205312425 205312426 phastConsElements100way lod=31 score:333, srow:729679
36952 chr1 205312428 205312462 phastConsElements100way lod=342 score:571, srow:729680
36952 chr1 205310494 205312493 cpgShore — values(x.gr)[overs$srow, ]:3864
  • 25 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36952 cellmeth_recounts PrEC: 5, LNCaP: 11, DU145: 13
36952 cellexp id=ENSG00000162873, name=KLHDC8A, PrEC=0, str=2, LNCaP=4, str=7, DU145=1, str=1
36952 tcgameth site:cg19593949, B=0.42, L=0.58, H=0.58
36952 tcgaexp gene=KLHDC8A, entrez=55220, pos=chr1:205305193-205326218(-), B=22, L=11, M=14, H=19