DMR 36965 chr1:209825651-209825800 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:209825651-209825800 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | LAMB3 (0bp away) |
| ANODEV p-value | 0.0107055355875 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36965 | LAMB3 | 2501 | uc001hhh.3 | chr1 | 209788218 | 209825820 | - | 150 | 100.0 | 0.47 | 0 | 100.0 | E1 (58), I1 (42), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 36965 | LAMB3 | 2501 | uc009xco.3 | chr1 | 209788218 | 209825674 | - | 24 | 16.0 | 0.15 | 0 | 100.0 | E1 (16), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 36965 | LAMB3 | 2501 | uc009xcp.1 | chr1 | 209803714 | 209825820 | - | 150 | 100.0 | 0.16 | 0 | 100.0 | E1 (58), I1 (42), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 36965 | LAMB3 | 2501 | uc010psl.1 | chr1 | 209796327 | 209825820 | - | 150 | 100.0 | 0.31 | 1 | 100.0 | E1 (58), I1 (42), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36965 | chr1 | 209825526 | 209825715 | wgEncodeRegDnaseClusteredV2 | 2 | score:171, srow:99835 |
| 36965 | chr1 | 209825781 | 209826095 | wgEncodeRegDnaseClusteredV2 | 19 | score:1000, srow:99836 |
| 36965 | chr1 | 209825246 | 209826786 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:8, expNums:11,41,163,168,402,563,564,613, expScores:198,398,366,528,612,248,363,165, srow:366918 |
| 36965 | chr1 | 209825357 | 209825886 | wgEncodeRegTfbsClusteredV3 | TFAP2A | score:117, expCount:1, expNums:369, expScores:117, srow:366920 |
| 36965 | chr1 | 209825447 | 209825962 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:205, expCount:1, expNums:370, expScores:205, srow:366921 |
| 36965 | chr1 | 209825579 | 209826142 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:202, expCount:1, expNums:169, expScores:111, srow:366922 |
| 36965 | chr1 | 209825634 | 209826009 | wgEncodeRegTfbsClusteredV3 | TBP | score:183, expCount:1, expNums:412, expScores:183, srow:366923 |
| 36965 | chr1 | 209825702 | 209826040 | wgEncodeRegTfbsClusteredV3 | FOS | score:251, expCount:3, expNums:557,558,559, expScores:203,194,251, srow:366924 |
| 36965 | chr1 | 209825716 | 209826085 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:229, expCount:1, expNums:380, expScores:229, srow:366925 |
| 36965 | chr1 | 209825727 | 209826122 | wgEncodeRegTfbsClusteredV3 | MAX | score:168, expCount:1, expNums:395, expScores:168, srow:366926 |
| 36965 | chr1 | 209825751 | 209826014 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:206, expCount:1, expNums:378, expScores:206, srow:366927 |
| 36965 | chr1 | 209825772 | 209826075 | wgEncodeRegTfbsClusteredV3 | BRCA1 | score:151, expCount:1, expNums:374, expScores:151, srow:366928 |
| 36965 | chr1 | 209825796 | 209825809 | tfbsConsSites | V$FOXO3_01 | score:833, zScore:1.84, srow:439102 |
| 36965 | chr1 | 209825796 | 209825809 | tfbsConsSites | V$FOXO4_02 | score:827, zScore:1.87, srow:439103 |
| 36965 | chr1 | 209825690 | 209825704 | phastConsElements100way | lod=20 | score:290, srow:749482 |
| 36965 | chr1 | 209825712 | 209825715 | phastConsElements100way | lod=20 | score:290, srow:749483 |
| 36965 | chr1 | 209825766 | 209825777 | phastConsElements100way | lod=48 | score:377, srow:749484 |
| 36965 | chr1 | 209825785 | 209825792 | phastConsElements100way | lod=20 | score:290, srow:749485 |
| 36965 | chr1 | 209825797 | 209825840 | phastConsElements100way | lod=173 | score:504, srow:749486 |
- 19 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36965 | cellmeth_recounts | PrEC: 0, LNCaP: 1, DU145: 0 |  |
| 36965 | cellexp | id=ENSG00000196878, name=LAMB3, PrEC=227416, str=566063, LNCaP=229, str=570, DU145=23839, str=36425 |  |
| 36965 | tcgameth | site:cg22502856, B=0.54, L=0.76, H=0.76 |  |
| 36965 | tcgameth | site:cg26107033, B=0.55, L=0.79, H=0.77 |  |
| 36965 | tcgaexp | gene=LAMB3, entrez=3914, pos=chr1:209788218-209825820(-), B=8355, L=3149, M=3278, H=1940 |  |