DMR 36976 chr1:217309451-217309600 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:217309451-217309600 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | ESRRG (0bp away) |
| ANODEV p-value | 0.00161709457054 |
| Frequencies | Benign: 2.0 (28.57%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36976 | ESRRG | 2551 | uc001hlc.1 | chr1 | 216676588 | 217311097 | - | 150 | 100.0 | 0.6 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 36976 | ESRRG | 2551 | uc001hld.1 | chr1 | 216676588 | 217311097 | - | 150 | 100.0 | 0.27 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36976 | chr1 | 217309386 | 217310095 | wgEncodeRegDnaseClusteredV2 | 28 | score:533, srow:103318 |
| 36976 | chr1 | 217309216 | 217309815 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:151, expCount:1, expNums:348, expScores:151, srow:380291 |
| 36976 | chr1 | 217309323 | 217309938 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:378, expCount:1, expNums:4, expScores:378, srow:380292 |
| 36976 | chr1 | 217309180 | 217310749 | cpgShore | — | values(x.gr)[overs$srow, ]:4036 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36976 | cellmeth_recounts | PrEC: 15, LNCaP: 69, DU145: 3 |  |
| 36976 | cellmeth_diffreps_PrECvsLNCaP | A=332, B=1545, Length=2680, Event=Up, log2FC=2.22, padj=0 |  |
| 36976 | cellmeth_diffreps_PrECvsDU145 | A=284, B=12, Length=1140, Event=Down, log2FC=-4.56, padj=0 |  |
| 36976 | cellmeth_diffreps_LNCaPvsDU145 | A=1638.85, B=67.35, Length=2560, Event=Down, log2FC=-4.6, padj=0 |  |
| 36976 | cellexp | id=ENSG00000196482, name=ESRRG, PrEC=53, str=18, LNCaP=20, str=34, DU145=0, str=0 |  |
| 36976 | tcgaexp | gene=ESRRG, entrez=2104, pos=chr1:216676588-217311097(-), B=597, L=919, M=904, H=658 |  |