DMR 36989 chr1:224804551-224805100 (550bp)

DMR Stats
Positionchr1:224804551-224805100 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesCNIH3 (0bp away)
ANODEV p-value2.16735307848e-05
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36989 CNIH3 2620 uc001hos.1 chr1 224804179 224928249 + 550 100.0 0.48 0 23.27 E1 (74), I1 (26.18), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36989 chr1 224803386 224806415 wgEncodeRegDnaseClusteredV2 108 score:1000, srow:106818
36989 chr1 224804273 224806040 wgEncodeRegTfbsClusteredV3 EZH2 score:914, expCount:6, expNums:1,6,17,19,21,40, expScores:352,546,275,138,326,318, srow:393276
36989 chr1 224804321 224805154 wgEncodeRegTfbsClusteredV3 SUZ12 score:176, expCount:2, expNums:358,578, expScores:173,141, srow:393277
36989 chr1 224804796 224805125 wgEncodeRegTfbsClusteredV3 MAX score:206, expCount:1, expNums:352, expScores:206, srow:393278
36989 chr1 224804969 224805568 wgEncodeRegTfbsClusteredV3 CTBP2 score:124, expCount:1, expNums:348, expScores:124, srow:393279
36989 chr1 224804847 224804860 tfbsConsSites V$FAC1_01 score:847, zScore:1.93, srow:470298
36989 chr1 224804851 224804856 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:470299
36989 chr1 224804877 224804894 tfbsConsSites V$IRF7_01 score:824, zScore:2.18, srow:470300
36989 chr1 224804880 224804892 tfbsConsSites V$IRF1_01 score:835, zScore:2.19, srow:470301
36989 chr1 224804880 224804892 tfbsConsSites V$IRF2_01 score:824, zScore:2.09, srow:470302
36989 chr1 224804906 224804926 tfbsConsSites V$NRSF_01 score:756, zScore:2.47, srow:470303
36989 chr1 224804907 224804934 tfbsConsSites V$PAX5_01 score:762, zScore:1.68, srow:470304
36989 chr1 224804918 224804938 tfbsConsSites V$NRSF_01 score:723, zScore:1.93, srow:470305
36989 chr1 224804945 224804953 tfbsConsSites V$GATA3_01 score:923, zScore:1.69, srow:470306
36989 chr1 224804945 224804954 tfbsConsSites V$GATA1_01 score:938, zScore:1.7, srow:470307
36989 chr1 224804945 224804954 tfbsConsSites V$GATA2_01 score:961, zScore:2.11, srow:470308
36989 chr1 224804948 224804967 tfbsConsSites V$ARNT_02 score:838, zScore:2.69, srow:470309
36989 chr1 224804948 224804967 tfbsConsSites V$MYCMAX_03 score:808, zScore:2.07, srow:470310
36989 chr1 224804949 224804965 tfbsConsSites V$XBP1_01 score:812, zScore:2.23, srow:470311
36989 chr1 224804952 224804963 tfbsConsSites V$MYCMAX_02 score:880, zScore:1.77, srow:470312
36989 chr1 224804952 224804963 tfbsConsSites V$NMYC_01 score:905, zScore:2.1, srow:470313
36989 chr1 224804953 224804962 tfbsConsSites V$USF_Q6 score:916, zScore:2.02, srow:470314
36989 chr1 224804953 224804963 tfbsConsSites V$SREBP1_01 score:853, zScore:1.73, srow:470315
36989 chr1 224804957 224804967 tfbsConsSites V$BACH2_01 score:892, zScore:2.15, srow:470316
36989 chr1 224804882 224804882 cosmic COSM352074 srow:111807
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Omics Overlaps

Dmrid Omic Set Data Plot
36989 cellmeth_recounts PrEC: 0, LNCaP: 8, DU145: 35
36989 cellmeth_diffreps_PrECvsDU145 A=0, B=12, Length=240, Event=Up, log2FC=Inf, padj=0.00174045876043459
36989 cellmeth_diffreps_PrECvsDU145 A=0, B=16, Length=340, Event=Up, log2FC=Inf, padj=0.000142423904773295
36989 cellmeth_diffreps_LNCaPvsDU145 A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864
36989 cellexp id=ENSG00000143786, name=CNIH3, PrEC=54, str=121, LNCaP=80, str=58, DU145=176, str=91
36989 tcgaexp gene=CNIH3, entrez=149111, pos=chr1:224804179-224928249(+), B=51, L=46, M=42, H=41
36989 pubmed gene=CNIH3, G=1, GP=0, GC=0, GM=0, GPM=0, GCM=0