DMR Stats | |
---|---|
Position | chr1:227173601-227174300 (View on UCSC) |
Width | 700bp |
Genomic Context | 3' end |
Nearest Genes | ADCK3 (0bp away) |
ANODEV p-value | 8.336350857e-06 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
37009 | ADCK3 | 2643 | uc001hqm.1 | chr1 | 227084589 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (79), E20 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc001hqn.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (79), E15 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc001hqo.1 | chr1 | 227165105 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (79), E11 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc009xeq.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (79), E15 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc009xer.1 | chr1 | 227170595 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (79), E7 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc010pvq.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (79), E12 (21) | 7.71 |
37009 | ADCK3 | 2643 | uc010pvr.1 | chr1 | 227153372 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (79), E11 (21) | 7.71 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
37009 | chr1 | 227173566 | 227174215 | wgEncodeRegDnaseClusteredV2 | 23 | score:455, srow:108423 |
37009 | chr1 | 227174286 | 227174795 | wgEncodeRegDnaseClusteredV2 | 17 | score:350, srow:108424 |
37009 | chr1 | 227172082 | 227174706 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:613, expCount:5, expNums:32,61,62,229,522, expScores:190,244,201,613,192, srow:399290 |
37009 | chr1 | 227173470 | 227173965 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:130, expCount:1, expNums:501, expScores:130, srow:399291 |
37009 | chr1 | 227174166 | 227174179 | tfbsConsSites | V$ROAZ_01 | score:745, zScore:1.74, srow:473961 |
37009 | chr1 | 227174174 | 227174186 | tfbsConsSites | V$CHOP_01 | score:836, zScore:1.84, srow:473962 |
37009 | chr1 | 227174183 | 227174201 | tfbsConsSites | V$PAX2_01 | score:781, zScore:1.94, srow:473963 |
37009 | chr1 | 227174215 | 227174243 | tfbsConsSites | V$MYOGNF1_01 | score:739, zScore:1.74, srow:473964 |
37009 | chr1 | 227174260 | 227174277 | tfbsConsSites | V$CART1_01 | score:791, zScore:1.83, srow:473965 |
37009 | chr1 | 227174275 | 227174285 | tfbsConsSites | V$NFE2_01 | score:890, zScore:2.18, srow:473966 |
37009 | chr1 | 227174275 | 227174287 | tfbsConsSites | V$AP1_01 | score:861, zScore:1.7, srow:473967 |
37009 | chr1 | 227174290 | 227174302 | tfbsConsSites | V$PAX3_01 | score:808, zScore:1.91, srow:473968 |
37009 | chr1 | 227174152 | 227174152 | cosmic | COSM464051 | srow:112973 |
37009 | chr1 | 227174152 | 227174152 | cosmic | COSM464052 | srow:112974 |
37009 | chr1 | 227174165 | 227174165 | cosmic | COSM1320435 | srow:112975 |
37009 | chr1 | 227174165 | 227174165 | cosmic | COSM1320436 | srow:112976 |
37009 | chr1 | 227174166 | 227174166 | cosmic | COSM904793 | srow:112977 |
37009 | chr1 | 227174166 | 227174166 | cosmic | COSM904794 | srow:112978 |
37009 | chr1 | 227174193 | 227174193 | cosmic | COSM414598 | srow:112979 |
37009 | chr1 | 227174193 | 227174193 | cosmic | COSM414599 | srow:112980 |
37009 | chr1 | 227174247 | 227174247 | cosmic | COSM904796 | srow:112981 |
37009 | chr1 | 227174270 | 227174270 | cosmic | COSM1473466 | srow:112982 |
37009 | chr1 | 227174270 | 227174270 | cosmic | COSM1473467 | srow:112983 |
37009 | chr1 | 227174152 | 227174164 | phastConsElements100way | lod=146 | score:487, srow:807256 |
37009 | chr1 | 227174166 | 227174176 | phastConsElements100way | lod=121 | score:468, srow:807257 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
37009 | cellmeth_recounts | PrEC: 43, LNCaP: 10, DU145: 3 | |
37009 | cellmeth_diffreps_PrECvsLNCaP | A=40, B=5, Length=380, Event=Down, log2FC=-3, padj=1.62084981826649e-06 | |
37009 | cellmeth_diffreps_PrECvsLNCaP | A=36, B=1, Length=460, Event=Down, log2FC=-5.17, padj=6.94455790086297e-09 | |
37009 | cellmeth_diffreps_PrECvsDU145 | A=40, B=2, Length=400, Event=Down, log2FC=-4.32, padj=9.27312367715555e-09 | |
37009 | cellmeth_diffreps_PrECvsDU145 | A=31, B=1, Length=400, Event=Down, log2FC=-4.95, padj=2.42525854690887e-07 | |
37009 | cellexp | id=ENSG00000163050, name=ADCK3, PrEC=389, str=304, LNCaP=8696, str=8679, DU145=830, str=653 | |
37009 | tcgaexp | gene=ADCK3, entrez=56997, pos=chr1:227084589-227175246(+), B=4622, L=6253, M=5729, H=5109 | |
37009 | pubmed | gene=ADCK3, G=17, GP=0, GC=0, GM=0, GPM=0, GCM=0 |