DMR 37058 chr1:244613301-244613550 (250bp)

DMR Stats
Positionchr1:244613301-244613550 (View on UCSC)
Width250bp
Genomic Contextexon
Nearest GenesADSS (0bp away)
ANODEV p-value0.00540337736724
FrequenciesBenign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37058 ADSS 2791 uc001iaj.3 chr1 244571794 244615436 - 250 100.0 2.18 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
37058 ADSS 2791 uc009xgr.2 chr1 244586137 244615436 - 250 100.0 0.69 1 0.0 E1 (0), I1 (31.2), E2 (69.2), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37058 chr1 244613266 244613535 wgEncodeRegDnaseClusteredV2 7 score:175, srow:117732
37058 chr1 244612523 244614522 cpgShore — values(x.gr)[overs$srow, ]:4458
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37058 cellmeth_recounts PrEC: 7, LNCaP: 4, DU145: 0
37058 cellmeth_diffreps_PrECvsDU145 A=11, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.00313959514768542
37058 cellexp id=ENSG00000035687, name=ADSS, PrEC=4162, str=2637, LNCaP=1657, str=2707, DU145=3531, str=5412
37058 tcgameth site:cg01012879, B=0.8, L=0.76, H=0.78
37058 tcgaexp gene=ADSS, entrez=159, pos=chr1:244571794-244615436(-), B=3261, L=3186, M=3080, H=3449