DMR 37066 chr2:45951-46200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr2:45951-46200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | FAM110C (0bp away) |
| ANODEV p-value | 0.00186981194691 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 5.0 (55.56 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37066 | FAM110C | 15961 | uc010yim.2 | chr2 | 38814 | 46588 | - | 250 | 100.0 | 0.44 | 0 | 44.8 | E1 (100), I1 (0), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37066 | chr2 | 45921 | 46355 | wgEncodeRegDnaseClusteredV2 | 29 | score:694, srow:592809 |
| 37066 | chr2 | 46187 | 46676 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:176, expCount:1, expNums:157, expScores:176, srow:2087645 |
| 37066 | chr2 | 46014 | 46014 | cosmic | COSM721760 | srow:629067 |
| 37066 | chr2 | 46046 | 46046 | cosmic | COSM352128 | srow:629068 |
| 37066 | chr2 | 46079 | 46079 | cosmic | COSM1133006 | srow:629069 |
| 37066 | chr2 | 46089 | 46089 | cosmic | COSM1306826 | srow:629070 |
| 37066 | chr2 | 45971 | 45973 | phastConsElements100way | lod=19 | score:285, srow:4371930 |
| 37066 | chr2 | 45986 | 45990 | phastConsElements100way | lod=23 | score:304, srow:4371931 |
| 37066 | chr2 | 45997 | 45997 | phastConsElements100way | lod=15 | score:262, srow:4371932 |
| 37066 | chr2 | 46000 | 46022 | phastConsElements100way | lod=79 | score:426, srow:4371933 |
| 37066 | chr2 | 46030 | 46033 | phastConsElements100way | lod=14 | score:255, srow:4371934 |
| 37066 | chr2 | 46039 | 46040 | phastConsElements100way | lod=14 | score:255, srow:4371935 |
| 37066 | chr2 | 46063 | 46073 | phastConsElements100way | lod=61 | score:400, srow:4371936 |
| 37066 | chr2 | 46075 | 46084 | phastConsElements100way | lod=68 | score:411, srow:4371937 |
| 37066 | chr2 | 46087 | 46094 | phastConsElements100way | lod=46 | score:373, srow:4371938 |
| 37066 | chr2 | 46096 | 46102 | phastConsElements100way | lod=49 | score:379, srow:4371939 |
| 37066 | chr2 | 46105 | 46117 | phastConsElements100way | lod=21 | score:295, srow:4371940 |
| 37066 | chr2 | 46123 | 46127 | phastConsElements100way | lod=43 | score:366, srow:4371941 |
| 37066 | chr2 | 46141 | 46144 | phastConsElements100way | lod=16 | score:268, srow:4371942 |
| 37066 | chr2 | 46154 | 46156 | phastConsElements100way | lod=21 | score:295, srow:4371943 |
| 37066 | chr2 | 46197 | 46201 | phastConsElements100way | lod=14 | score:255, srow:4371944 |
| 37066 | chr2 | 45511 | 46559 | cpgIsland | CpG: 124 | length:1049, cpgNum:124, gcNum:734, perCpg:23.6, perGc:70, obsExp:0.97, srow:14594 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37066 | cellmeth_recounts | PrEC: 0, LNCaP: 49, DU145: 0 |  |
| 37066 | cellmeth_diffreps_PrECvsLNCaP | A=1, B=164, Length=1120, Event=Up, log2FC=7.36, padj=0 |  |
| 37066 | cellmeth_diffreps_LNCaPvsDU145 | A=175.32, B=0, Length=1120, Event=Down, log2FC=-Inf, padj=0 |  |
| 37066 | cellexp | id=ENSG00000184731, name=FAM110C, PrEC=4535, str=4854, LNCaP=224, str=138, DU145=780, str=633 |  |
| 37066 | tcgameth | site:cg19145730, B=0.02, L=0.15, H=0.17 |  |
| 37066 | tcgaexp | gene=FAM110C, entrez=642273, pos=chr2:38814-46588(-), B=105, L=24, M=26, H=25 |  |