DMR 37116 chr2:20401551-20401750 (200bp)

DMR Stats
Positionchr2:20401551-20401750 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesSDC1 (0bp away)
ANODEV p-value0.00817517771619
FrequenciesBenign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37116 SDC1 16068 uc002rdo.1 chr2 20400558 20424927 - 200 100.0 0.25 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 3.5
37116 SDC1 16068 uc002rdp.1 chr2 20400558 20425194 - 200 100.0 0.25 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 3.5
37116 SDC1 16068 uc010exv.3 chr2 20401247 20424927 - 200 100.0 0.25 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37116 chr2 20401541 20402215 wgEncodeRegDnaseClusteredV2 7 score:310, srow:604330
37116 chr2 20401748 20401751 phastConsElements100way lod=17 score:274, srow:4415141
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37116 cellmeth_recounts PrEC: 3, LNCaP: 5, DU145: 1
37116 cellexp id=ENSG00000115884, name=SDC1, PrEC=99382, str=165310, LNCaP=2127, str=2614, DU145=20002, str=21053
37116 tcgaexp gene=SDC1, entrez=6382, pos=chr2:20400558-20425194(-), B=11874, L=5997, M=5644, H=5501